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苦木素类化合物作为潜在抗疟药物的作用:一种计算机模拟方法。

Role of quassinoids as potential antimalarial agents: An in silico approach.

作者信息

Rampogu Shailima

机构信息

Department of Biochemistry, Cachet Labs, Yousufguda, Hyderabad, Telangana, India.

出版信息

Anc Sci Life. 2015 Oct-Dec;35(2):85-9. doi: 10.4103/0257-7941.171676.

Abstract

BACKGROUND

Malaria is an infection caused by mosquitoes in human beings which can be dangerous if untreated. A well known plant product, quassinoids are known to have antimalarial activity. These bioactive phytochemicals belong to the triterpene family. Quassinoids are used in the present study to act against malarial dihydrofolate reductase (Pf-DHFR), a potential antimalarial target. Nevertheless, viṣama jvara (~malaria) has been treated with the bark of Cinchona since a long time.

AIM

The aim of the present experiment is to perform the protein-ligand docking for Pf- DHFR and Quassinoids and study their binding affinities.

SETTING AND DESIGN

The software used for the present study is the discovery studio (Accelrys 2.1), Protein Data Bank (PDB), and Chemsketch.

MATERIALS AND METHODS

The protein for the present study was imported from protein data bank with the PDB Id, 4dpd and was prepared for docking. The ligands used for the study are the quassinoids. They were drawn using chemsketch and the 3D structures were generated. The docking was done subsequently.

STATISTICAL ANALYSIS USED

Molecular modeling technique was used for the protein-ligand docking analysis.

RESULTS

The docking results showed that the Quassinoids Model_1 showed the highest dock score of 40.728.

CONCLUSION

The present study proves the promising potential of quassinoids as novel drugs against malaria. The dock results conclude that the quassinoids can be adopted as an alternative drug against malaria.

摘要

背景

疟疾是一种由蚊子传播给人类的感染疾病,若不治疗可能会很危险。众所周知,植物产物苦木素类具有抗疟活性。这些生物活性植物化学物质属于三萜类家族。在本研究中,苦木素类用于作用于疟原虫二氢叶酸还原酶(Pf-DHFR),这是一个潜在的抗疟靶点。然而,长期以来,金鸡纳树皮一直被用于治疗疟疾(viṣama jvara)。

目的

本实验的目的是对Pf-DHFR和苦木素类进行蛋白质-配体对接,并研究它们的结合亲和力。

设置与设计

本研究使用的软件是发现工作室(Accelrys 2.1)、蛋白质数据库(PDB)和化学绘图软件(Chemsketch)。

材料与方法

本研究中的蛋白质从蛋白质数据库中导入,其PDB编号为4dpd,并准备进行对接。用于研究的配体是苦木素类。使用化学绘图软件绘制它们,并生成3D结构。随后进行对接。

所用统计分析

分子建模技术用于蛋白质-配体对接分析。

结果

对接结果表明,苦木素类模型1显示出最高对接分数40.728。

结论

本研究证明了苦木素类作为新型抗疟药物具有广阔的潜力。对接结果表明,苦木素类可作为抗疟的替代药物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/87f1/4728869/84d080032076/ASL-35-85-g001.jpg

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