• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

甲型流感病毒基因组中CpG频率的升高会减弱致病性,但会增强宿主对感染的反应。

Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection.

作者信息

Gaunt Eleanor, Wise Helen M, Zhang Huayu, Lee Lian N, Atkinson Nicky J, Nicol Marlynne Quigg, Highton Andrew J, Klenerman Paul, Beard Philippa M, Dutia Bernadette M, Digard Paul, Simmonds Peter

机构信息

Infection and Immunity Division, Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom.

Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.

出版信息

Elife. 2016 Feb 16;5:e12735. doi: 10.7554/eLife.12735.

DOI:10.7554/eLife.12735
PMID:26878752
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4798949/
Abstract

Previously, we demonstrated that frequencies of CpG and UpA dinucleotides profoundly influence the replication ability of echovirus 7 (Tulloch et al., 2014). Here, we show that that influenza A virus (IAV) with maximised frequencies of these dinucleotides in segment 5 showed comparable attenuation in cell culture compared to unmodified virus and a permuted control (CDLR). Attenuation was also manifested in vivo, with 10-100 fold reduced viral loads in lungs of mice infected with 200PFU of CpG-high and UpA-high mutants. However, both induced powerful inflammatory cytokine and adaptive (T cell and neutralising antibody) responses disproportionate to their replication. CpG-high infected mice also showed markedly reduced clinical severity, minimal weight loss and reduced immmunopathology in lung, yet sterilising immunity to lethal dose WT challenge was achieved after low dose (20PFU) pre-immunisation with this mutant. Increasing CpG dinucleotide frequencies represents a generic and potentially highly effective method for generating safe, highly immunoreactive vaccines.

摘要

此前,我们证明了CpG和UpA二核苷酸的频率会深刻影响埃可病毒7的复制能力(Tulloch等人,2014年)。在此,我们表明,第5节段中这些二核苷酸频率最大化的甲型流感病毒(IAV)与未修饰病毒和置换对照(CDLR)相比,在细胞培养中表现出相当的减毒效果。减毒在体内也有体现,感染200PFU的高CpG和高UpA突变体的小鼠肺部病毒载量降低了10至100倍。然而,两者都引发了强大的炎性细胞因子和适应性(T细胞和中和抗体)反应,与其复制情况不成比例。高CpG感染的小鼠临床严重程度也显著降低,体重减轻最小,肺部免疫病理学减轻,然而,用该突变体低剂量(20PFU)预免疫后,对致死剂量野生型攻击实现了无菌免疫。增加CpG二核苷酸频率是一种通用且可能非常有效的生成安全、高免疫反应性疫苗的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/e3084415faac/elife-12735-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/5b177b8ba9c1/elife-12735-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/b1443728d2c9/elife-12735-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/1cde5985691a/elife-12735-fig1-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/878e7af3528e/elife-12735-fig1-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/8d045229be71/elife-12735-fig1-figsupp4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/c9c5d3ad038e/elife-12735-fig1-figsupp5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/ba597ad21c3c/elife-12735-fig1-figsupp6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/55d73d48555c/elife-12735-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/92cfcf3cc371/elife-12735-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/9985b83cb5f4/elife-12735-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/14b76d3a32c3/elife-12735-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/e1be7a333f31/elife-12735-fig3-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/809967d30003/elife-12735-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/8b976e9b3959/elife-12735-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/e3084415faac/elife-12735-fig4-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/5b177b8ba9c1/elife-12735-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/b1443728d2c9/elife-12735-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/1cde5985691a/elife-12735-fig1-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/878e7af3528e/elife-12735-fig1-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/8d045229be71/elife-12735-fig1-figsupp4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/c9c5d3ad038e/elife-12735-fig1-figsupp5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/ba597ad21c3c/elife-12735-fig1-figsupp6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/55d73d48555c/elife-12735-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/92cfcf3cc371/elife-12735-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/9985b83cb5f4/elife-12735-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/14b76d3a32c3/elife-12735-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/e1be7a333f31/elife-12735-fig3-figsupp3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/809967d30003/elife-12735-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/8b976e9b3959/elife-12735-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2913/4798949/e3084415faac/elife-12735-fig4-figsupp2.jpg

相似文献

1
Elevation of CpG frequencies in influenza A genome attenuates pathogenicity but enhances host response to infection.甲型流感病毒基因组中CpG频率的升高会减弱致病性,但会增强宿主对感染的反应。
Elife. 2016 Feb 16;5:e12735. doi: 10.7554/eLife.12735.
2
IRF5 Promotes Influenza Virus-Induced Inflammatory Responses in Human Induced Pluripotent Stem Cell-Derived Myeloid Cells and Murine Models.IRF5 促进人诱导多能干细胞衍生的髓样细胞和小鼠模型中流感病毒诱导的炎症反应。
J Virol. 2020 Apr 16;94(9). doi: 10.1128/JVI.00121-20.
3
Influenza A virus-induced degradation of eukaryotic translation initiation factor 4B contributes to viral replication by suppressing IFITM3 protein expression.甲型流感病毒诱导真核翻译起始因子 4B 的降解有助于通过抑制 IFITM3 蛋白表达来促进病毒复制。
J Virol. 2014 Aug;88(15):8375-85. doi: 10.1128/JVI.00126-14. Epub 2014 May 14.
4
A functional investigation of the suppression of CpG and UpA dinucleotide frequencies in plant RNA virus genomes.植物 RNA 病毒基因组中 CpG 和 UpA 二核苷酸频率抑制的功能研究。
Sci Rep. 2019 Dec 4;9(1):18359. doi: 10.1038/s41598-019-54853-0.
5
Comparison of CpG- and UpA-mediated restriction of RNA virus replication in mammalian and avian cells and investigation of potential ZAP-mediated shaping of host transcriptome compositions.比较 CpG 和 UpA 介导的哺乳动物和禽类细胞中 RNA 病毒复制的限制作用,并研究潜在的 ZAP 介导的宿主转录组组成的形成。
RNA. 2022 Aug;28(8):1089-1109. doi: 10.1261/rna.079102.122. Epub 2022 Jun 8.
6
The dinucleotide composition of the Zika virus genome is shaped by conflicting evolutionary pressures in mammalian hosts and mosquito vectors.寨卡病毒基因组的二核苷酸组成受到哺乳动物宿主和蚊子媒介中相互冲突的进化压力的影响。
PLoS Biol. 2021 Apr 19;19(4):e3001201. doi: 10.1371/journal.pbio.3001201. eCollection 2021 Apr.
7
Defective interfering influenza virus confers only short-lived protection against influenza virus disease: evidence for a role for adaptive immunity in DI virus-mediated protection in vivo.缺陷干扰流感病毒只能提供短暂的流感病毒疾病保护:适应性免疫在体内 DI 病毒介导的保护中的作用证据。
Vaccine. 2011 Sep 2;29(38):6584-91. doi: 10.1016/j.vaccine.2011.06.114. Epub 2011 Jul 14.
8
RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.通过密码子对去优化实现的RNA病毒减毒是CpG/UpA二核苷酸频率增加的一种假象。
Elife. 2014 Dec 9;3:e04531. doi: 10.7554/eLife.04531.
9
Exacerbation of disease by intranasal liquid administration following influenza virus infection in mice.流感病毒感染后经鼻腔给予液体导致疾病恶化的小鼠模型。
Pathog Dis. 2020 Mar 1;78(2). doi: 10.1093/femspd/ftaa017.
10
Early cytokine dysregulation and viral replication are associated with mortality during lethal influenza infection.早期细胞因子失调和病毒复制与致命性流感感染期间的死亡率相关。
Viral Immunol. 2014 Jun;27(5):214-24. doi: 10.1089/vim.2013.0095. Epub 2014 May 1.

引用本文的文献

1
Mapping evolutionary paradigm of bovine viral diarrhea virus associated with different organizations of nucleotide.绘制与不同核苷酸组织相关的牛病毒性腹泻病毒的进化模式
Virulence. 2025 Dec;16(1):2550620. doi: 10.1080/21505594.2025.2550620. Epub 2025 Aug 29.
2
Design and nonviral delivery of live attenuated vaccine to prevent chronic hepatitis C virus-like infection.用于预防慢性丙型肝炎病毒样感染的减毒活疫苗的设计与非病毒递送
Nat Commun. 2025 Aug 15;16(1):7629. doi: 10.1038/s41467-025-62813-8.
3
Codon-deoptimized single-round infectious virus for therapeutic and vaccine applications.

本文引用的文献

1
Generation of Live Attenuated Influenza Virus by Using Codon Usage Bias.利用密码子使用偏好性产生减毒活流感病毒
J Virol. 2015 Nov;89(21):10762-73. doi: 10.1128/JVI.01443-15. Epub 2015 Aug 12.
2
Attenuation of dengue (and other RNA viruses) with codon pair recoding can be explained by increased CpG/UpA dinucleotide frequencies.通过密码子对重编码对登革热(及其他RNA病毒)进行减毒可由增加的CpG/UpA二核苷酸频率来解释。
Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):E3633-4. doi: 10.1073/pnas.1507339112. Epub 2015 Jun 12.
3
Large-scale recoding of an arbovirus genome to rebalance its insect versus mammalian preference.
用于治疗和疫苗应用的密码子去优化单轮感染性病毒。
Sci Rep. 2025 Jul 1;15(1):22033. doi: 10.1038/s41598-025-05643-4.
4
Machine learning methods for predicting human-adaptive influenza A virus reassortment based on intersegment constraint.基于片段间约束预测人适应性甲型流感病毒重配的机器学习方法
Front Microbiol. 2025 Mar 21;16:1546536. doi: 10.3389/fmicb.2025.1546536. eCollection 2025.
5
Virulence and Immune Evasion Strategies of FMDV: Implications for Vaccine Design.口蹄疫病毒的毒力与免疫逃逸策略:对疫苗设计的启示
Vaccines (Basel). 2024 Sep 19;12(9):1071. doi: 10.3390/vaccines12091071.
6
Dengue virus preferentially uses human and mosquito non-optimal codons.登革热病毒优先使用人类和蚊子非最佳密码子。
Mol Syst Biol. 2024 Oct;20(10):1085-1108. doi: 10.1038/s44320-024-00052-7. Epub 2024 Jul 22.
7
Syn-CpG-Spacer: A Panel web app for synonymous recoding of viral genomes with CpG dinucleotides.Syn-CpG-间隔区:一个用于对含有CpG二核苷酸的病毒基因组进行同义编码的面板式网络应用程序。
J Open Source Softw. 2024 Apr 3;9(96):6332. doi: 10.21105/joss.06332.
8
Antiviral Activity of Zinc Finger Antiviral Protein (ZAP) in Different Virus Families.锌指抗病毒蛋白(ZAP)在不同病毒家族中的抗病毒活性。
Pathogens. 2023 Dec 17;12(12):1461. doi: 10.3390/pathogens12121461.
9
Comprehensive in virio structure probing analysis of the influenza A virus identifies functional RNA structures involved in viral genome replication.对甲型流感病毒进行全面的病毒体内结构探测分析,确定了参与病毒基因组复制的功能性RNA结构。
Comput Struct Biotechnol J. 2023 Oct 19;21:5259-5272. doi: 10.1016/j.csbj.2023.10.036. eCollection 2023.
10
Flavivirus genome recoding by codon optimisation confers genetically stable in vivo attenuation in both mice and mosquitoes.通过密码子优化使黄病毒基因组重新编码可赋予其在小鼠和蚊子体内稳定的遗传减毒特性。
PLoS Pathog. 2023 Oct 26;19(10):e1011753. doi: 10.1371/journal.ppat.1011753. eCollection 2023 Oct.
对虫媒病毒基因组进行大规模重新编码,以重新平衡其在昆虫与哺乳动物之间的偏好性。
Proc Natl Acad Sci U S A. 2015 Apr 14;112(15):4749-54. doi: 10.1073/pnas.1502864112. Epub 2015 Mar 30.
4
RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.通过密码子对去优化实现的RNA病毒减毒是CpG/UpA二核苷酸频率增加的一种假象。
Elife. 2014 Dec 9;3:e04531. doi: 10.7554/eLife.04531.
5
Influenza A virus attenuation by codon deoptimization of the NS gene for vaccine development.通过对NS基因进行密码子去优化来开发甲型流感病毒减毒疫苗。
J Virol. 2014 Sep;88(18):10525-40. doi: 10.1128/JVI.01565-14. Epub 2014 Jun 25.
6
Total synthesis of a functional designer eukaryotic chromosome.功能设计真核染色体的全合成。
Science. 2014 Apr 4;344(6179):55-8. doi: 10.1126/science.1249252. Epub 2014 Mar 27.
7
Computer-aided codon-pairs deoptimization of the major envelope GP5 gene attenuates porcine reproductive and respiratory syndrome virus.计算机辅助密码子对主要包膜 GP5 基因的去优化减弱了猪繁殖与呼吸综合征病毒。
Virology. 2014 Feb;450-451:132-9. doi: 10.1016/j.virol.2013.12.009. Epub 2013 Dec 31.
8
The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication.CpG 和 UpA 二核苷酸频率对 RNA 病毒复制的影响,以及固有细胞途径在病毒减毒和增强复制中的作用特征。
Nucleic Acids Res. 2014 Apr;42(7):4527-45. doi: 10.1093/nar/gku075. Epub 2014 Jan 26.
9
Cellular immune correlates of protection against symptomatic pandemic influenza.细胞免疫与保护人体免受大流行性流感症状感染的相关性。
Nat Med. 2013 Oct;19(10):1305-12. doi: 10.1038/nm.3350. Epub 2013 Sep 22.
10
Changes in codon-pair bias of human immunodeficiency virus type 1 have profound effects on virus replication in cell culture.人类免疫缺陷病毒 1 型密码子对偏倚的变化对细胞培养中的病毒复制有深远的影响。
Retrovirology. 2013 Jul 25;10:78. doi: 10.1186/1742-4690-10-78.