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功能设计真核染色体的全合成。

Total synthesis of a functional designer eukaryotic chromosome.

机构信息

Department of Environmental Health Sciences, Johns Hopkins University (JHU) School of Public Health, Baltimore, MD 21205, USA.

出版信息

Science. 2014 Apr 4;344(6179):55-8. doi: 10.1126/science.1249252. Epub 2014 Mar 27.

DOI:10.1126/science.1249252
PMID:24674868
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4033833/
Abstract

Rapid advances in DNA synthesis techniques have made it possible to engineer viruses, biochemical pathways and assemble bacterial genomes. Here, we report the synthesis of a functional 272,871-base pair designer eukaryotic chromosome, synIII, which is based on the 316,617-base pair native Saccharomyces cerevisiae chromosome III. Changes to synIII include TAG/TAA stop-codon replacements, deletion of subtelomeric regions, introns, transfer RNAs, transposons, and silent mating loci as well as insertion of loxPsym sites to enable genome scrambling. SynIII is functional in S. cerevisiae. Scrambling of the chromosome in a heterozygous diploid reveals a large increase in a-mater derivatives resulting from loss of the MATα allele on synIII. The complete design and synthesis of synIII establishes S. cerevisiae as the basis for designer eukaryotic genome biology.

摘要

DNA 合成技术的快速发展使得工程病毒、生化途径和组装细菌基因组成为可能。在这里,我们报告了一种功能性的 272871 碱基对的设计真核染色体 synIII 的合成,它基于天然酿酒酵母染色体 III 的 316617 碱基对。synIII 的改变包括 TAG/TAA 终止密码子替换、端粒区域、内含子、转移 RNA、转座子和沉默交配位点的缺失,以及loxPsym 位点的插入,以实现基因组乱序。synIII 在酿酒酵母中是有功能的。在杂合二倍体中染色体的乱序显示,由于 synIII 上 MATα 等位基因的丢失,α-母本衍生物的数量大大增加。synIII 的完整设计和合成确立了酿酒酵母作为设计真核基因组生物学基础的地位。

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1
The Saccharomyces cerevisiae SCRaMbLE system and genome minimization.酿酒酵母SCRaMbLE系统与基因组最小化
Bioeng Bugs. 2012 May-Jun;3(3):168-71. doi: 10.4161/bbug.19543. Epub 2012 May 1.
2
Assembling large DNA segments in yeast.在酵母中组装大型DNA片段。
Methods Mol Biol. 2012;852:133-50. doi: 10.1007/978-1-61779-564-0_11.
3
Assembling DNA fragments by USER fusion.通过USER融合组装DNA片段。
Biosaf Health. 2024 Nov 15;6(6):376-382. doi: 10.1016/j.bsheal.2024.11.001. eCollection 2024 Dec.
4
SHIP identifies genomic safe harbors in eukaryotic organisms using genomic general feature annotation.SHIP利用基因组一般特征注释识别真核生物中的基因组安全港。
Sci Rep. 2025 Feb 28;15(1):7193. doi: 10.1038/s41598-025-91249-9.
5
Design and structure of overlapping regions in PCA via deep learning.通过深度学习实现主成分分析中重叠区域的设计与结构
Synth Syst Biotechnol. 2024 Dec 27;10(2):442-451. doi: 10.1016/j.synbio.2024.12.007. eCollection 2025 Jun.
6
Construction and iterative redesign of synXVI a 903 kb synthetic Saccharomyces cerevisiae chromosome.酿酒酵母903 kb合成染色体synXVI的构建与迭代重新设计。
Nat Commun. 2025 Jan 20;16(1):841. doi: 10.1038/s41467-024-55318-3.
7
Recent advances in genome-scale engineering in and their applications.基因组规模工程的最新进展及其应用。 (你提供的原文“in and their applications”表述似乎不完整,推测完整表述可能是“Recent advances in genome-scale engineering in organisms and their applications”,这里按照推测完整后的内容进行了翻译,你可根据实际情况调整 )
Eng Microbiol. 2023 Sep 15;4(1):100115. doi: 10.1016/j.engmic.2023.100115. eCollection 2024 Mar.
8
Link Between Individual Codon Frequencies and Protein Expression: Going Beyond Codon Adaptation Index.个体密码子频率与蛋白质表达之间的关系:超越密码子适应指数。
Int J Mol Sci. 2024 Oct 29;25(21):11622. doi: 10.3390/ijms252111622.
9
The design and engineering of synthetic genomes.合成基因组的设计与工程
Nat Rev Genet. 2025 May;26(5):298-319. doi: 10.1038/s41576-024-00786-y. Epub 2024 Nov 6.
10
Reaching New Heights in Genetic Code Manipulation with High Throughput Screening.高通量筛选助力基因密码操作技术新突破
Chem Rev. 2024 Nov 13;124(21):12145-12175. doi: 10.1021/acs.chemrev.4c00329. Epub 2024 Oct 17.
Methods Mol Biol. 2012;852:77-95. doi: 10.1007/978-1-61779-564-0_7.
4
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5
Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.精确地在体内操纵染色体可实现全基因组密码子替换。
Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822.
6
Creation of a bacterial cell controlled by a chemically synthesized genome.人工合成基因组控制的细菌细胞的创建。
Science. 2010 Jul 2;329(5987):52-6. doi: 10.1126/science.1190719. Epub 2010 May 20.
7
Programming cells by multiplex genome engineering and accelerated evolution.通过多重基因组工程和加速进化对细胞进行编程。
Nature. 2009 Aug 13;460(7257):894-898. doi: 10.1038/nature08187. Epub 2009 Jul 26.
8
Enzymatic assembly of DNA molecules up to several hundred kilobases.长达数百千碱基的DNA分子的酶促组装。
Nat Methods. 2009 May;6(5):343-5. doi: 10.1038/nmeth.1318. Epub 2009 Apr 12.
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