Bongiorni Silvia, Valentini Alessio, Chillemi Giovanni
Department for Innovation in Biological, Agro-food and Forest systems, University of Tuscia Viterbo, Italy.
Department of SuperComputing Applications and Innovation, Cineca Rome, Italy.
Front Genet. 2016 Feb 11;7:14. doi: 10.3389/fgene.2016.00014. eCollection 2016.
The knowledge of the molecular effects of the C313Y mutation, responsible for the "double muscle" phenotype in Piedmontese cattle, can help understanding the actual mechanism of phenotype determination and paves the route for a better modulation of the positive effects of this economic important phenotype in the beef industry, while minimizing the negative side effects, now inevitably intersected. The structure and dynamic behavior of the active dimeric form of Myostatin in cattle was analyzed by means of three state-of-the-art Molecular Dynamics simulations, 200-ns long, of wild-type and C313Y mutants. Our results highlight a role for the conserved Arg333 in establishing a network of short and long range interactions between the two monomers in the wild-type protein that is destroyed upon the C313Y mutation even in a single monomer. Furthermore, the native protein shows an asymmetry in residue fluctuation that is absent in the double monomer mutant. Time window analysis on further 200-ns of simulation demonstrates that this is a characteristic behavior of the protein, likely dependent on long range communications between monomers. The same behavior, in fact, has already been observed in other mutated dimers. Finally, the mutation does not produce alterations in the secondary structure elements that compose the characteristic TGF-β cystine-knot motif.
皮埃蒙特牛“双肌”表型所对应的C313Y突变的分子效应知识,有助于理解表型决定的实际机制,并为更好地调控牛肉产业中这一具有重要经济意义的表型的积极效应铺平道路,同时将目前不可避免交织在一起的负面副作用降至最低。通过对野生型和C313Y突变体进行三次时长200纳秒的最先进分子动力学模拟,分析了牛肌肉生长抑制素活性二聚体形式的结构和动态行为。我们的结果突出了保守的精氨酸333在野生型蛋白质中两个单体之间建立短程和长程相互作用网络的作用,即使在单个单体中,C313Y突变也会破坏这种网络。此外,天然蛋白质在残基波动上表现出不对称性,而在双单体突变体中则不存在这种不对称性。对另外200纳秒模拟的时间窗口分析表明,这是该蛋白质的一种特征行为,可能依赖于单体之间的长程通信。事实上,在其他突变二聚体中也已经观察到了相同的行为。最后,该突变不会导致构成特征性TGF-β胱氨酸结基序的二级结构元件发生改变。