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慢性应激暴露后比格犬与中华田园犬垂体-肾上腺轴中miRNA表达谱的比较。

Comparison of miRNA expression profiles in pituitary-adrenal axis between Beagle and Chinese Field dogs after chronic stress exposure.

作者信息

Luo Wei, Fang Meixia, Xu Haiping, Xing Huijie, Fu Jiangnan, Nie Qinghua

机构信息

Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China.

Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding and National-Local Joint Engineering Research Center for Livestock Breeding, South China Agricultural University & Guangdong Wens Food Corporation, Guangzhou, Guangdong, China.

出版信息

PeerJ. 2016 Feb 18;4:e1682. doi: 10.7717/peerj.1682. eCollection 2016.

Abstract

MicoRNAs (miRNAs), usually as gene regulators, participate in various biological processes, including stress responses. The hypothalamus-pituitary-adrenal axis (HPA axis) is an important pathway in regulating stress response. Although the mechanism that HPA axis regulates stress response has been basically revealed, the knowledge that miRNAs regulate stress response within HPA axis, still remains poor. The object of this study was to investigate the miRNAs in the pituitary and adrenal cortex that regulate chronic stress response with high-throughput sequencing. The pituitary and adrenal cortex of beagles and Chinese Field dogs (CFD) from a stress exposure group (including beagle pituitary 1 (BP1), CFD pituitary 1 (CFDP1), beagle adrenal cortex 1 (BAC1), CFD adrenal cortex 1 (CFDAC1)) and a control group (including beagle pituitary 2 (BP2), CFD pituitary 2 (CFDP2), beagle adrenal cortex 2 (BAC2), CFD adrenal cortex 2 (CFDAC2)), were selected for miRNA-seq comparisons. Comparisons, that were made in pituitary (including BP1 vs. BP2, CFDP1 vs. CFDP2, BP1 vs. CFDP1 and BP2 vs. CFDP2) and adrenal cortex (including BAC1 vs. BAC2, CFDAC1 vs. CFDAC2, BAC1 vs. CFDAC1 and BAC2 vs. CFDAC2), showed that a total of 39 and 18 common differentially expressed miRNAs (DE-miRNAs) (Total read counts > 1,000, Fold change > 2 & p-value < 0.001), that shared in at least two pituitary comparisons and at least two adrenal cortex comparisons, were detected separately. These identified DE-miRNAs were predicted for target genes, thus resulting in 3,959 and 4,010 target genes in pituitary and adrenal cortex, respectively. Further, 105 and 10 differentially expressed genes (DEGs) (Fold change > 2 & p-value < 0.05) from those target genes in pituitary and adrenal cortex were obtained separately, in combination with our previous corresponding transcriptome study. Meanwhile, in line with that miRNAs usually negatively regulated their target genes and the dual luciferase reporter assay, we finally identified cfa-miR-205 might play an important role by upregulating MMD in pituitary and hippocampus, thus enhancing the immune response, under chronic stress exposure. Our results shed light on the miRNA expression profiles in the pituitary and adrenal cortex with and without chronic stress exposure, and provide a new insight into miR-205 with its feasible role in regulating chronic stress in the pituitary and hippocampus through targeting MMD.

摘要

微小RNA(miRNA)通常作为基因调节因子,参与包括应激反应在内的各种生物学过程。下丘脑-垂体-肾上腺轴(HPA轴)是调节应激反应的重要途径。尽管HPA轴调节应激反应的机制已基本阐明,但关于miRNA在HPA轴内调节应激反应的认识仍很匮乏。本研究的目的是通过高通量测序研究垂体和肾上腺皮质中调节慢性应激反应的miRNA。选取应激暴露组(包括比格犬垂体1(BP1)、中华田园犬垂体1(CFDP1)、比格犬肾上腺皮质1(BAC1)、中华田园犬肾上腺皮质1(CFDAC1))和对照组(包括比格犬垂体2(BP2)、中华田园犬垂体2(CFDP2)、比格犬肾上腺皮质2(BAC2)、中华田园犬肾上腺皮质2(CFDAC2))的比格犬和中华田园犬的垂体和肾上腺皮质进行miRNA测序比较。在垂体(包括BP1与BP2、CFDP1与CFDP2、BP1与CFDP1以及BP2与CFDP2)和肾上腺皮质(包括BAC1与BAC2、CFDAC1与CFDAC2、BAC1与CFDAC1以及BAC2与CFDAC2)中进行的比较显示,分别检测到总共39个和18个共同差异表达的miRNA(DE-miRNA)(总读数计数>1000,折叠变化>2且p值<0.001),这些miRNA在至少两个垂体比较和至少两个肾上腺皮质比较中共享。对这些鉴定出的DE-miRNA进行靶基因预测,结果在垂体和肾上腺皮质中分别得到3959个和4010个靶基因。此外,结合我们之前相应的转录组研究,分别从垂体和肾上腺皮质的那些靶基因中获得了105个和10个差异表达基因(DEG)(折叠变化>2且p值<0.05)。同时,鉴于miRNA通常对其靶基因起负调控作用以及双荧光素酶报告基因检测,我们最终确定在慢性应激暴露下,cfa-miR-205可能通过上调垂体和海马中的MMD发挥重要作用,从而增强免疫反应。我们的结果揭示了有无慢性应激暴露情况下垂体和肾上腺皮质中的miRNA表达谱,并为miR-205通过靶向MMD在调节垂体和海马慢性应激中的可行作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d5d/4768678/07622926270b/peerj-04-1682-g001.jpg

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