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本文引用的文献

1
MicrobiomeGWAS: A Tool for Identifying Host Genetic Variants Associated with Microbiome Composition.宏基因组关联分析(MicrobiomeGWAS):一种用于识别与微生物组组成相关的宿主遗传变异的工具。
Genes (Basel). 2022 Jul 9;13(7):1224. doi: 10.3390/genes13071224.
2
Staphylococcus aureus and the ecology of the nasal microbiome.金黄色葡萄球菌与鼻腔微生物群生态学
Sci Adv. 2015 Jun 5;1(5):e1400216. doi: 10.1126/sciadv.1400216. eCollection 2015 Jun.
3
Genetic associations and shared environmental effects on the skin microbiome of Korean twins.韩国双胞胎皮肤微生物群的基因关联及共同环境影响
BMC Genomics. 2015 Nov 23;16:992. doi: 10.1186/s12864-015-2131-y.
4
Genome-Wide Association Studies of the Human Gut Microbiota.人类肠道微生物群的全基因组关联研究。
PLoS One. 2015 Nov 3;10(11):e0140301. doi: 10.1371/journal.pone.0140301. eCollection 2015.
5
Host genetic variation impacts microbiome composition across human body sites.宿主基因变异会影响人体各部位的微生物组组成。
Genome Biol. 2015 Sep 15;16(1):191. doi: 10.1186/s13059-015-0759-1.
6
Genetic and environmental control of host-gut microbiota interactions.宿主-肠道微生物群相互作用的遗传和环境控制
Genome Res. 2015 Oct;25(10):1558-69. doi: 10.1101/gr.194118.115. Epub 2015 Aug 10.
7
Complex host genetics influence the microbiome in inflammatory bowel disease.复杂的宿主遗传学影响炎症性肠病中的微生物组。
Genome Med. 2014 Dec 2;6(12):107. doi: 10.1186/s13073-014-0107-1. eCollection 2014.
8
Diet dominates host genotype in shaping the murine gut microbiota.在塑造小鼠肠道微生物群方面,饮食比宿主基因型起更主导的作用。
Cell Host Microbe. 2015 Jan 14;17(1):72-84. doi: 10.1016/j.chom.2014.11.010. Epub 2014 Dec 18.
9
Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice.在一个高级杂交小鼠群体中,宿主基因和饮食而非免疫球蛋白A的表达共同塑造了肠道微生物群的组成特征。
Genome Biol. 2014;15(12):552. doi: 10.1186/s13059-014-0552-6.
10
Human genetics shape the gut microbiome.人类遗传学塑造了肠道微生物组。
Cell. 2014 Nov 6;159(4):789-99. doi: 10.1016/j.cell.2014.09.053.

阐明宿主基因组在塑造微生物组组成中的作用。

Elucidating the role of the host genome in shaping microbiome composition.

作者信息

Davenport Emily R

机构信息

a Department of Molecular Biology and Genetics , Cornell University , Ithaca , NY , USA.

出版信息

Gut Microbes. 2016;7(2):178-84. doi: 10.1080/19490976.2016.1155022.

DOI:10.1080/19490976.2016.1155022
PMID:26939746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4856462/
Abstract

A major goal of microbiome research is to identify the factors that determine bacterial composition within and upon a host. Environmental factors are thought to play a large role, such as diet in determining gut microbiome composition and moisture in determining skin microbiome composition. The role of host genetics, however, has been a source of debate in the literature. Recently, we examined the association of host genetics with human gut microbiome composition in the Hutterites, a population that lives and eats communally. We identified heritable bacterial taxa and host genetic loci associated with their abundances. In this addendum, I put these results into a broader context along with other recent studies of microbiome heritability, and synthesize common themes that appear across organisms and tissues, such as the relatively small extent genetics plays compared to environment and the role of host genetic variation in immune response and barrier integrity.

摘要

微生物组研究的一个主要目标是确定决定宿主内部和体表细菌组成的因素。环境因素被认为起着很大的作用,比如饮食在决定肠道微生物组组成方面,以及湿度在决定皮肤微生物组组成方面。然而,宿主遗传学的作用在文献中一直是一个争论的来源。最近,我们研究了宿主遗传学与哈特派人群肠道微生物组组成的关联,哈特派人群共同生活和饮食。我们确定了可遗传的细菌分类群以及与其丰度相关的宿主基因位点。在本附录中,我将这些结果与微生物组遗传力的其他近期研究放在更广泛的背景下,并综合了在不同生物体和组织中出现的共同主题,比如与环境相比遗传学所起作用相对较小,以及宿主基因变异在免疫反应和屏障完整性中的作用。