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N-(3-氧代丁酰基)-L-高丝氨酸内酯的晶体结构

Crystal structure of N-(3-oxo-butano-yl)-l-homoserine lactone.

作者信息

Newberry R W, Raines R T

机构信息

Department of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, WI, 53706, USA.

Department of Chemistry, University of Wisconsin-Madison, 1101 University Ave., Madison, WI, 53706, USA; Department of Biochemistry, University of Wisconsin-Madison, 433 Babcock Dr., Madison, WI, 53706, USA.

出版信息

Acta Crystallogr E Crystallogr Commun. 2016 Jan 9;72(Pt 2):136-9. doi: 10.1107/S2056989015024913. eCollection 2016 Feb 1.

Abstract

The structure and absolute configuration of the title compound, C8H11NO4, which is a known quorum-sensing modulator, have been determined. The mol-ecule exhibits signs of an intra-molecular attractive carbon-yl-carbonyl n→π* inter-action between the amide and lactone ester groups, specifically - a short contact of 2.709 (2) Å between the amide oxygen atom and ester carbon atom, approach of the amide oxygen atom to the ester carbonyl group along the Bürgi-Dunitz trajectory, at 99.1 (1)°, and pyramidalization of the ester carbonyl group by 1.1 (1)°. Moreover, a similar n→π* inter-action is observed for the amide carbonyl group approached by the ketone oxygen donor. These inter-actions apparently affect the conformation of the uncomplexed mol-ecule, which adopts a different shape when bound to protein receptors. In the crystal, the mol-ecules form translational chains along the a axis via N-H⋯O hydrogen bonds.

摘要

已确定标题化合物C8H11NO4(一种已知的群体感应调节剂)的结构和绝对构型。该分子表现出酰胺基和内酯酯基之间分子内有吸引力的羰基-羰基n→π相互作用的迹象,具体而言,酰胺氧原子与酯碳原子之间有2.709 (2) Å的短接触,酰胺氧原子沿 Bürgi-Dunitz轨迹以99.1 (1)°接近酯羰基,酯羰基的锥化度为1.1 (1)°。此外,对于被酮氧供体接近的酰胺羰基,也观察到类似的n→π相互作用。这些相互作用显然影响未络合分子的构象,该分子在与蛋白质受体结合时会采用不同的形状。在晶体中,分子通过N-H⋯O氢键沿a轴形成平移链。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6c73/4770979/a8f83d66c603/e-72-00136-fig1.jpg

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