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4-羟基苯乙酸脱羧酶及其同源激活酶的结构与功能

Structure and Function of 4-Hydroxyphenylacetate Decarboxylase and Its Cognate Activating Enzyme.

作者信息

Selvaraj Brinda, Buckel Wolfgang, Golding Bernard T, Ullmann G Matthias, Martins Berta M

机构信息

Institut fx00FC;r Biologie, Strukturbiologie/Biochemie, Humboldt-Universitx00E4;t zu Berlin, Berlin, Germany.

出版信息

J Mol Microbiol Biotechnol. 2016;26(1-3):76-91. doi: 10.1159/000440882. Epub 2016 Mar 10.

Abstract

4-Hydroxyphenylacetate decarboxylase (4Hpad) is the prototype of a new class of Fe-S cluster-dependent glycyl radical enzymes (Fe-S GREs) acting on aromatic compounds. The two-enzyme component system comprises a decarboxylase responsible for substrate conversion and a dedicated activating enzyme (4Hpad-AE). The decarboxylase uses a glycyl/thiyl radical dyad to convert 4-hydroxyphenylacetate into p-cresol (4-methylphenol) by a biologically unprecedented Kolbe-type decarboxylation. In addition to the radical dyad prosthetic group, the decarboxylase unit contains two [4Fe-4S] clusters coordinated by an extra small subunit of unknown function. 4Hpad-AE reductively cleaves S-adenosylmethionine (SAM or AdoMet) at a site-differentiated [4Fe-4S]2+/+ cluster (RS cluster) generating a transient 5'-deoxyadenosyl radical that produces a stable glycyl radical in the decarboxylase by the abstraction of a hydrogen atom. 4Hpad-AE binds up to two auxiliary [4Fe-4S] clusters coordinated by a ferredoxin-like insert that is C-terminal to the RS cluster-binding motif. The ferredoxin-like domain with its two auxiliary clusters is not vital for SAM-dependent glycyl radical formation in the decarboxylase, but facilitates a longer lifetime for the radical. This review describes the 4Hpad and cognate AE families and focuses on the recent advances and open questions concerning the structure, function and mechanism of this novel Fe-S-dependent class of GREs.

摘要

4-羟基苯乙酸脱羧酶(4Hpad)是一类新型的作用于芳香族化合物的铁硫簇依赖性甘氨酰自由基酶(Fe-S GREs)的原型。该双酶组分系统包括负责底物转化的脱羧酶和专门的激活酶(4Hpad-AE)。脱羧酶利用甘氨酰/硫自由基二元组,通过一种生物学上前所未有的科尔贝型脱羧反应将4-羟基苯乙酸转化为对甲酚(4-甲基苯酚)。除了自由基二元组辅基外,脱羧酶单元还包含两个由一个功能未知的额外小亚基配位的[4Fe-4S]簇。4Hpad-AE在一个位点特异性的[4Fe-4S]2+/+簇(RS簇)处还原裂解S-腺苷甲硫氨酸(SAM或AdoMet),产生一个瞬时的5'-脱氧腺苷自由基,该自由基通过夺取一个氢原子在脱羧酶中产生一个稳定的甘氨酰自由基。4Hpad-AE结合多达两个由一个铁氧还蛋白样插入序列配位的辅助[4Fe-4S]簇,该插入序列位于RS簇结合基序的C末端。带有两个辅助簇的铁氧还蛋白样结构域对于脱羧酶中依赖SAM的甘氨酰自由基形成并非至关重要,但有助于自由基具有更长的寿命。本综述描述了4Hpad和同源AE家族,并重点关注了关于这类新型铁硫依赖性GREs的结构、功能和机制的最新进展及未解决的问题。

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