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4-羟苯基乙酰乙酸脱羧酶激活酶催化一个典型的 S-腺苷甲硫氨酸还原裂解反应。

4-Hydroxyphenylacetate decarboxylase activating enzyme catalyses a classical S-adenosylmethionine reductive cleavage reaction.

机构信息

Institut für Biologie, Strukturbiologie/Biochemie-Radikalenzyme, Humboldt-Universität zu Berlin, Unter den Linden 6, 10099 Berlin, Germany.

出版信息

J Biol Inorg Chem. 2013 Aug;18(6):633-43. doi: 10.1007/s00775-013-1008-2. Epub 2013 May 29.

DOI:10.1007/s00775-013-1008-2
PMID:23716017
Abstract

4-Hydroxyphenylacetate decarboxylase (4Hpad) is an Fe/S cluster containing glycyl radical enzyme (GRE), which catalyses the last step of tyrosine fermentation in clostridia, generating the bacteriostatic p-cresol. The respective activating enzyme (4Hpad-AE) displays two cysteine-rich motifs in addition to the classical S-adenosylmethionine (SAM) binding cluster (RS cluster) motif. These additional motifs are also present in other glycyl radical activating enzymes (GR-AE) and it has been postulated that these orthologues may use an alternative SAM homolytic cleavage mechanism, generating a putative 3-amino-3-carboxypropyl radical and 5'-deoxy-5'-(methylthio)adenosine but not a 5'-deoxyadenosyl radical and methionine. 4Hpad-AE produced from a codon-optimized synthetic gene binds a maximum of two 4Fe-4S clusters as revealed by EPR and Mössbauer spectroscopy. The enzyme only catalyses the turnover of SAM under reducing conditions, and the reaction products were identified as 5'-deoxyadenosine (quenched form of 5'-deoxyadenosyl radical) and methionine. We demonstrate that the 5'-deoxyadenosyl radical is the activating agent for 4Hpad through p-cresol formation and correlation between the production of 5'-deoxyadenosine and the generation of glycyl radical in 4Hpad. Therefore, we conclude that 4Hpad-AE catalyses a classical SAM-dependent glycyl radical formation as reported for GR-AE without auxiliary clusters. Our observation casts doubt on the suggestion that GR-AE containing auxiliary clusters catalyse the alternative cleavage reaction detected for glycerol dehydratase activating enzyme.

摘要

4-羥基苯乙酸脱羧酶(4Hpad)是一种含铁/硫簇的甘氨酰基自由基酶(GRE),它在梭菌中催化酪氨酸发酵的最后一步,生成抑菌性的对甲酚。相应的激活酶(4Hpad-AE)除了具有经典的 S-腺苷甲硫氨酸(SAM)结合簇(RS 簇)基序外,还显示出两个富含半胱氨酸的基序。这些附加基序也存在于其他甘氨酰基自由基激活酶(GR-AE)中,有人假设这些同源物可能使用替代的 SAM 均裂裂解机制,生成一个假定的 3-氨基-3-羧基丙基自由基和 5'-脱氧-5'-(甲硫基)腺苷,但不是 5'-脱氧腺苷自由基和甲硫氨酸。通过 EPR 和穆斯堡尔光谱学揭示,从密码子优化的合成基因产生的 4Hpad-AE 最多结合两个 4Fe-4S簇。该酶仅在还原条件下催化 SAM 的周转,反应产物被鉴定为 5'-脱氧腺苷(5'-脱氧腺苷自由基的猝灭形式)和甲硫氨酸。我们证明,5'-脱氧腺苷自由基是通过对甲酚形成和 4Hpad 中 5'-脱氧腺苷的产生与甘氨酰基自由基的生成之间的相关性,作为 4Hpad 的激活剂。因此,我们得出结论,4Hpad-AE 催化一种经典的依赖 SAM 的甘氨酰基自由基形成,正如 GR-AE 中没有辅助簇的报道一样。我们的观察结果对含有辅助簇的 GR-AE 催化甘油脱水酶激活酶检测到的替代裂解反应的建议提出了质疑。

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