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对滤食性贻贝地中海贻贝基因组的初步洞察。

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis.

作者信息

Murgarella Maria, Puiu Daniela, Novoa Beatriz, Figueras Antonio, Posada David, Canchaya Carlos

机构信息

Department of Biochemistry, Genetics and Immunology and Unidad Asociada CSIC, University of Vigo, Vigo, Spain.

Center for Computational Biology. McKusick-Nathans, Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.

出版信息

PLoS One. 2016 Mar 15;11(3):e0151561. doi: 10.1371/journal.pone.0151561. eCollection 2016.

Abstract

Mussels belong to the phylum Mollusca, one of the largest and most diverse taxa in the animal kingdom. Despite their importance in aquaculture and in biology in general, genomic resources from mussels are still scarce. To broaden and increase the genomic knowledge in this family, we carried out a whole-genome sequencing study of the cosmopolitan Mediterranean mussel (Mytilus galloprovincialis). We sequenced its genome (32X depth of coverage) on the Illumina platform using three pair-end libraries with different insert sizes. The large number of contigs obtained pointed out a highly complex genome of 1.6 Gb where repeated elements seem to be widespread (~30% of the genome), a feature that is also shared with other marine molluscs. Notwithstanding the limitations of our genome sequencing, we were able to reconstruct two mitochondrial genomes and predict 10,891 putative genes. A comparative analysis with other molluscs revealed a gene enrichment of gene ontology categories related to multixenobiotic resistance, glutamate biosynthetic process, and the maintenance of ciliary structures.

摘要

贻贝属于软体动物门,是动物界中最大且最多样化的分类群之一。尽管它们在水产养殖以及整个生物学领域都很重要,但来自贻贝的基因组资源仍然稀缺。为了拓宽和增加对这个家族的基因组认识,我们对分布广泛的地中海贻贝(Mytilus galloprovincialis)进行了全基因组测序研究。我们在Illumina平台上使用三种不同插入片段大小的双末端文库对其基因组进行测序(覆盖深度为32X)。获得的大量重叠群表明其基因组高度复杂,大小为1.6 Gb,其中重复元件似乎广泛存在(约占基因组的30%),这一特征也与其他海洋软体动物相同。尽管我们的基因组测序存在局限性,但我们能够重建两个线粒体基因组并预测出10,891个推定基因。与其他软体动物的比较分析揭示了与多异生物质抗性、谷氨酸生物合成过程以及纤毛结构维持相关的基因本体类别基因富集。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/37b1/4792442/81d5c74cf586/pone.0151561.g001.jpg

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