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通过核磁共振化学交换饱和转移测定低丰度激发态的伪接触位移

Determination of pseudocontact shifts of low-populated excited states by NMR chemical exchange saturation transfer.

作者信息

Ma R S, Li Q F, Wang A D, Zhang J H, Liu Z J, Wu J H, Su X C, Ruan K

机构信息

Hefei National Laboratory for Physical Science at the Microscale, School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230027, China.

State Key Laboratory of Elemento-Organic Chemistry, Collatorative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China.

出版信息

Phys Chem Chem Phys. 2016 May 18;18(20):13794-8. doi: 10.1039/c6cp01127f.

Abstract

Despite the critical roles of excited states in protein functions, they remain intractable for most structural studies because of their notably low populations. Chemical shifts for "invisible" states in slow exchange with the ground state are intuitively observed using nuclear magnetic resonance (NMR) chemical exchange saturation transfer (CEST) experiments. Here, we present a CEST NMR spectroscopy study for the observation of protein pseudocontact shifts (PCSs) of excited states, which carry valuable angular and distance information about these states. We first validate this approach, dubbed PCS-CEST, in the slow-exchange system of Abp1p SH3-Ark1p labeled with lanthanide ions, where the PCSs of the minor states resemble those of the holo-form ground state as expected. We further demonstrate that pre-existing folding transitional conformations of an FF domain exhibit remarkably lower PCS values than the ground state, which suggests that the low-populated ensemble is unfolded or largely unfolded. A higher resolution of PCSs of the minor states is achieved using our 1D selective CEST experiments. Thus, PCS-CEST provides an exquisite structural probe into the minor but functionally essential excited states.

摘要

尽管激发态在蛋白质功能中起着关键作用,但由于其丰度极低,在大多数结构研究中仍然难以处理。利用核磁共振(NMR)化学交换饱和转移(CEST)实验,可以直观地观察到与基态进行缓慢交换的“不可见”态的化学位移。在这里,我们展示了一项CEST NMR光谱研究,用于观察激发态的蛋白质伪接触位移(PCS),这些位移携带了有关这些状态的有价值的角度和距离信息。我们首先在镧系离子标记的Abp1p SH3-Ark1p的缓慢交换系统中验证了这种称为PCS-CEST的方法,在该系统中,次要状态的PCS与预期的全态基态相似。我们进一步证明,FF结构域预先存在的折叠过渡构象的PCS值明显低于基态,这表明低丰度的集合是未折叠或大部分未折叠的。使用我们的一维选择性CEST实验,可以实现次要状态PCS的更高分辨率。因此,PCS-CEST为研究次要但功能重要的激发态提供了一种精确的结构探针。

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