Pandey Aditya, Shin Kyungsoo, Patterson Robin E, Liu Xiang-Qin, Rainey Jan K
a Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada.
b Department of Chemistry, Dalhousie University, Halifax, NS B3H 4R2, Canada.
Biochem Cell Biol. 2016 Dec;94(6):507-527. doi: 10.1139/bcb-2015-0143. Epub 2016 Jan 20.
Membrane proteins are still heavily under-represented in the protein data bank (PDB), owing to multiple bottlenecks. The typical low abundance of membrane proteins in their natural hosts makes it necessary to overexpress these proteins either in heterologous systems or through in vitro translation/cell-free expression. Heterologous expression of proteins, in turn, leads to multiple obstacles, owing to the unpredictability of compatibility of the target protein for expression in a given host. The highly hydrophobic and (or) amphipathic nature of membrane proteins also leads to challenges in producing a homogeneous, stable, and pure sample for structural studies. Circumventing these hurdles has become possible through the introduction of novel protein production protocols; efficient protein isolation and sample preparation methods; and, improvement in hardware and software for structural characterization. Combined, these advances have made the past 10-15 years very exciting and eventful for the field of membrane protein structural biology, with an exponential growth in the number of solved membrane protein structures. In this review, we focus on both the advances and diversity of protein production and purification methods that have allowed this growth in structural knowledge of membrane proteins through X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, and cryo-electron microscopy (cryo-EM).
由于存在多个瓶颈,膜蛋白在蛋白质数据库(PDB)中的代表性仍然严重不足。膜蛋白在其天然宿主中的典型低丰度使得有必要在异源系统中或通过体外翻译/无细胞表达来过量表达这些蛋白。反过来,由于目标蛋白在给定宿主中表达的兼容性不可预测,蛋白质的异源表达会导致多个障碍。膜蛋白高度疏水和(或)两亲的性质也给制备用于结构研究的均匀、稳定和纯的样品带来了挑战。通过引入新的蛋白质生产方案、高效的蛋白质分离和样品制备方法以及改进用于结构表征的硬件和软件,克服这些障碍已成为可能。综合起来,这些进展使得过去10到15年对于膜蛋白结构生物学领域来说非常令人兴奋且充满了重要事件,已解析的膜蛋白结构数量呈指数增长。在这篇综述中,我们重点关注蛋白质生产和纯化方法的进展与多样性,这些方法通过X射线晶体学、核磁共振(NMR)光谱和冷冻电子显微镜(cryo-EM)使膜蛋白的结构知识得以增长。