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溶液核磁共振:在重建环境中研究膜蛋白结构和功能的有力工具。

Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

机构信息

Department of Molecular and Cell Biology, college of liberal arts and sciences, University of Connecticut at Storrs, Storrs, Connecticut 06269

Department of Pharmaceutical Sciences, School of Pharmacy, University of Connecticut at Storrs, Storrs, Connecticut 06269

出版信息

J Biol Chem. 2019 Nov 1;294(44):15914-15931. doi: 10.1074/jbc.REV119.009178. Epub 2019 Sep 24.

Abstract

A third of the genes in prokaryotic and eukaryotic genomes encode membrane proteins that are either essential for signal transduction and solute transport or function as scaffold structures. Unlike many of their soluble counterparts, the overall structural and functional organization of membrane proteins is sparingly understood. Recent advances in X-ray crystallography, cryo-EM, and nuclear magnetic resonance (NMR) are closing this gap by enabling an in-depth view of these ever-elusive proteins at atomic resolution. Despite substantial technological advancements, however, the overall proportion of membrane protein entries in the Protein Data Bank (PDB) remains <4%. This paucity is mainly attributed to difficulties associated with their expression and purification, propensity to form large multisubunit complexes, and challenges pertinent to identification of an ideal detergent, lipid, or detergent/lipid mixture that closely mimic their native environment. NMR is a powerful technique to obtain atomic-resolution and dynamic details of a protein in solution. This is accomplished through an assortment of isotopic labeling schemes designed to acquire multiple spectra that facilitate deduction of the final protein structure. In this review, we discuss current approaches and technological developments in the determination of membrane protein structures by solution NMR and highlight recent structural and mechanistic insights gained with this technique. We also discuss strategies for overcoming size limitations in NMR applications, and we explore a plethora of membrane mimetics available for the structural and mechanistic understanding of these essential cellular proteins.

摘要

三分之一的原核生物和真核生物基因组中的基因编码膜蛋白,这些蛋白要么是信号转导和溶质运输所必需的,要么作为支架结构发挥作用。与许多可溶性蛋白不同,膜蛋白的整体结构和功能组织很少被理解。X 射线晶体学、冷冻电镜和核磁共振(NMR)的最新进展通过以原子分辨率深入观察这些难以捉摸的蛋白质,正在缩小这一差距。然而,尽管技术有了实质性的进步,但蛋白质数据库(PDB)中膜蛋白条目所占的总体比例仍<4%。这种不足主要归因于它们的表达和纯化困难、倾向于形成大的多亚基复合物,以及与鉴定理想的去污剂、脂质或去污剂/脂质混合物相关的挑战,这些物质需要尽可能模拟其天然环境。NMR 是一种在溶液中获得蛋白质原子分辨率和动态细节的强大技术。这是通过一系列同位素标记方案来实现的,这些方案旨在获取多个光谱,从而有助于推断最终的蛋白质结构。在这篇综述中,我们讨论了通过溶液 NMR 确定膜蛋白结构的当前方法和技术发展,并强调了该技术获得的最新结构和机制见解。我们还讨论了克服 NMR 应用中尺寸限制的策略,并探讨了大量可用于这些重要细胞蛋白的结构和机制理解的膜类似物。

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