Trinh Huan, Yi Tae-Hoo
Department of Oriental Medicinal Material and Processing, College of Life Science, Kyung Hee University Global Campus, 1732 Deokyoungdaero, Giheung-gu, Yongin-si, Gyeonggi do, 446-701, Republic of Korea.
Int J Syst Evol Microbiol. 2016 Jun;66(6):2382-2388. doi: 10.1099/ijsem.0.001032. Epub 2016 Mar 31.
A Gram-stain-negative, aerobic, non-motile, rod-shaped and yellow-pigmented bacterium, designated strain THG S15-2T, was isolated from playground soil in Sindorim-dong, Guro-gu, Seoul, South Korea. According to 16S rRNA gene sequence comparisons, strain THG S15-2T was found to be related most closely to Pedobacter ginsengisoli Gsoil 104T (97.5 % similarity), Pedobacter panaciterrae Gsoil 042T (97.4 %), Pedobacter seoulensis THG-G12T (97.1 %) and Pedobacter caeni LMG 22862T (97.1 %). The level of DNA-DNA relatedness between strain THG S15-2T and its phylogenetically closest neighbours was below 30.0 %. The only isoprenoid quinone detected in strain THG S15-2T was menaquinone-7. The DNA G+C content was 45.9 mol%. The major polar lipid was phosphatidylethanolamine. The major component in the polyamine pattern was sym-homospermidine. The major fatty acids were identified as summed feature 3 (C16:1ω7c and/or C16:1ω6c), iso-C15:0 and C16:0. These data supported the affiliation of strain THG S15-2T to the genus Pedobacter. Strain THG S15-2T was distinguished from related Pedobacter species by physiological and biochemical tests. Therefore, strain THG S15-2T represents a novel species, for which the name Pedobacter humi sp. nov. is proposed. The type strain is THG S15-2T (= KCTC 42735T = CCTCC AB 2015293T).
从韩国首尔市九老区新道林洞的操场土壤中分离出一株革兰氏染色阴性、需氧、无运动性、杆状且产黄色色素的细菌,命名为THG S15-2T菌株。根据16S rRNA基因序列比较,发现THG S15-2T菌株与参地黄杆菌Gsoil 104T(相似度97.5%)、泛刺五加黄杆菌Gsoil 042T(97.4%)、首尔黄杆菌THG-G12T(97.1%)和污泥黄杆菌LMG 22862T(97.1%)亲缘关系最为密切。THG S15-2T菌株与其系统发育关系最密切的近缘菌株之间的DNA-DNA杂交水平低于30.0%。在THG S15-2T菌株中检测到的唯一类异戊二烯醌是甲基萘醌-7。DNA的G+C含量为45.9 mol%。主要极性脂是磷脂酰乙醇胺。多胺模式中的主要成分是对称高亚精胺。主要脂肪酸被鉴定为特征性总和3(C16:1ω7c和/或C16:1ω6c)、异C15:0和C16:0。这些数据支持THG S15-2T菌株属于黄杆菌属。通过生理生化试验,THG S15-2T菌株与相关黄杆菌属物种相区分。因此,THG S15-2T菌株代表一个新物种,提议将其命名为土壤黄杆菌(Pedobacter humi sp. nov.)。模式菌株为THG S15-2T(=KCTC 42735T = CCTCC AB 2015293T)。