Wright Erik S, Vetsigian Kalin H
Department of Bacteriology, Wisconsin Institute for Discovery, University of Wisconsin-Madison, 330 N. Orchard Street, Madison, Wisconsin 53715, USA.
Nat Commun. 2016 Apr 21;7:11274. doi: 10.1038/ncomms11274.
It is largely unknown how the process of microbial community assembly is affected by the order of species arrival, initial species abundances and interactions between species. A minimal way of capturing competitive abilities in a frequency-dependent manner is with an invasibility network specifying whether a species at low abundance can increase in frequency in an environment dominated by another species. Here, using a panel of prolific small-molecule producers and a habitat with feast-and-famine cycles, we show that the most abundant strain can often exclude other strains--resulting in bistability between pairs of strains. Instead of a single winner, the empirically determined invasibility network is ruled by multiple strains that cannot invade each other, and does not contain loops of cyclic dominance. Antibiotic inhibition contributes to bistability by helping producers resist invasions while at high abundance and by reducing producers' ability to invade when at low abundance.
微生物群落组装过程如何受到物种到达顺序、初始物种丰度以及物种间相互作用的影响,目前很大程度上尚不清楚。以频率依赖方式捕捉竞争能力的一种最简单方法是使用一个入侵性网络,该网络可指定低丰度物种在由另一个物种主导的环境中频率是否能够增加。在此,我们使用一组多产小分子的菌株以及一个具有饱饥循环的栖息地,结果表明最丰富的菌株通常能够排除其他菌株,从而导致菌株对之间出现双稳态。经验确定的入侵性网络并非由单一获胜者主导,而是由多个无法相互入侵且不包含循环优势环的菌株所决定。抗生素抑制作用通过帮助高产菌株在高丰度时抵抗入侵以及在低丰度时降低其入侵能力,从而促进双稳态的形成。