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新种人参苯基杆菌,从锈山参根际分离得到。

Phenylobacterium panacis sp. nov., isolated from the rhizosphere of rusty mountain ginseng.

作者信息

Farh Mohamed El-Agamy, Kim Yeon-Ju, Singh Priyanka, Hoang Van-An, Yang Deok-Chun

机构信息

GraduateSchool of Biotechnology and Ginseng Bank, College of Life Science, KyungHee University, Yongin, 446-701, Republic of Korea.

Department of Oriental Medicinal Biotechnology, College of Life Sciences, Kyung Hee University, Yongin, 446-701, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2016 Jul;66(7):2691-2696. doi: 10.1099/ijsem.0.001109. Epub 2016 Apr 26.

Abstract

A novel, Gram-stain-negative, rod-shaped bacterial strain, designated as DCY109, was isolated from the rhizosphere of rusty mountain ginseng root located on Hwacheon mountain of Gangwon province, South Korea. 16S rRNA gene sequence analysis revealed that strain DCY109 belonged to the genus Phenylobacterium and was related closely to Phenylobacterium muchangponense KACC 15042 (98.2 % similarity), Phenylobacterium immobile DSM 1986 (96.9 %) and Phenylobacterium koreense KCTC 12206 (96.7 %). The predominant isoprenoid quinone was ubiquinone (Q-10) and the DNA G+C content was 66.9 mol%. The major polar lipids were phosphatidylglycerol, an unidentified glycolipid and an unidentified lipid. The major fatty acids (>10 %) were C16 : 0, summed feature 3 (which comprised C16 : 1ω7c and/or C16 : 1ω6c) and summed feature 8 (which comprised C18 : 1ω7c and/or C18 : 1ω6c). Mean DNA-DNA relatedness between strain DCY109 and its closest relative, P. muchangponense KACC 15042, was 15.1±3.9 %. Based on the physiological, biochemical, chemotaxonomic and genetic analyses, strain DCY109 is considered to represent a novel species of the genus Phenylobacterium, for which the name Phenylobacterium panacis sp. nov. is proposed. The type strain is DCY109 (=KCTC 42749=JCM 31045).

摘要

从韩国江原道华川山生锈的山参根际土壤中分离出一株新型革兰氏阴性杆状细菌,命名为DCY109。16S rRNA基因序列分析表明,DCY109菌株属于苯基杆菌属,与多昌苯基杆菌KACC 15042(相似度98.2%)、不动苯基杆菌DSM 1986(96.9%)和韩国苯基杆菌KCTC 12206(96.7%)密切相关。主要类异戊二烯醌为泛醌(Q-10),DNA G+C含量为66.9 mol%。主要极性脂为磷脂酰甘油、一种未鉴定的糖脂和一种未鉴定的脂类。主要脂肪酸(>10%)为C16:0、总和特征3(包括C16:1ω7c和/或C16:1ω6c)和总和特征8(包括C18:1ω7c和/或C18:1ω6c)。DCY109菌株与其最接近的亲缘种多昌苯基杆菌KACC 15042之间的平均DNA-DNA相关性为15.1±3.9%。基于生理、生化、化学分类和遗传分析,DCY109菌株被认为代表了苯基杆菌属的一个新物种,为此提出了新名称泛酸苯基杆菌(Phenylobacterium panacis sp. nov.)。模式菌株为DCY109(=KCTC 42749=JCM 31045)。

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