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木糖樟短杆菌新种,从海滩土壤中分离得到,以及对木糖樟短杆菌属的描述修正。

Phenylobacterium muchangponense sp. nov., isolated from beach soil, and emended description of the genus Phenylobacterium.

机构信息

Department of Microbiology and Biotechnology Research Institute, Chungbuk National University, Cheongju 361-763, Chungbuk, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2012 Apr;62(Pt 4):977-983. doi: 10.1099/ijs.0.028902-0. Epub 2011 Jun 13.

Abstract

A Gram-staining-negative, non-motile, aerobic bacterium, designated strain A8T, was isolated from the beach soil of Muchangpo, Korea. Cells were rod-shaped (0.5-0.6×0.7-1.3 µm) and colonies were colourless, circular with entire edges and had a glistening surface. The isolate grew optimally at 25-35 °C and did not require NaCl for growth. Strain A8T could not assimilate acetate, DL-lactate, succinate, antipyrine or chloridazon, but weakly assimilated L-phenylalanine. Major fatty acids were summed feature 7 (comprising C18:1ω7c/ω9t/ω12t), C16:0 and summed feature 4 (comprising C16:1ω7c/ iso-C15:0 2-OH). The major isoprenoid quinone was ubiquinone-10 and the DNA G+C content was 72.3 mol%. Comparative 16S rRNA gene sequence studies showed that strain A8T belonged to the family Caulobacteraceae, class Alphaproteobacteria and was most closely related to type strains of members of the genus Phenylobacterium (95.7-97.1 % similarity). Signature nucleotides and phylogenetic analysis of the 16S rRNA gene sequence also suggested that strain A8T was affiliated with the genus Phenylobacterium. Low DNA-DNA relatedness values (3.0±1.8-11.5±3.2 %) indicated that strain A8T represented a distinct species that was separated from other type strains in the genus Phenylobacterium. On the basis of evidence from a polyphasic study, it is proposed that strain A8T (=KACC 15042T=LMG 25973T) represents the type strain of a novel species, Phenylobacterium muchangponense sp. nov. An emended description of the genus Phenylobacterium is also presented.

摘要

一株革兰氏阴性、非运动性、需氧细菌,被命名为 A8T 菌株,从韩国牧藏浦海滩土壤中分离得到。细胞呈杆状(0.5-0.6×0.7-1.3 µm),菌落无色,圆形,边缘整齐,有光泽。该分离株在 25-35°C 下生长最佳,不需要 NaCl 生长。A8T 菌株不能同化乙酸盐、DL-乳酸盐、琥珀酸盐、安替比林或氯唑草酮,但能弱同化 L-苯丙氨酸。主要脂肪酸为(summed feature 7,包括 C18:1ω7c/ω9t/ω12t)、C16:0 和(summed feature 4,包括 C16:1ω7c/iso-C15:0 2-OH)。主要的异戊二烯醌是泛醌-10,DNA G+C 含量为 72.3 mol%。比较 16S rRNA 基因序列研究表明,A8T 菌株属于钙杆菌科,α变形菌纲,与 Phenylobacterium 属的模式菌株最为密切相关(95.7-97.1%相似性)。16S rRNA 基因序列的特征核苷酸和系统发育分析也表明,A8T 菌株与 Phenylobacterium 属有关。低的 DNA-DNA 同源性值(3.0±1.8-11.5±3.2%)表明,A8T 株代表了一个与 Phenylobacterium 属其他模式菌株不同的独特种。基于多相研究的证据,建议 A8T 株(=KACC 15042T=LMG 25973T)代表一个新种的模式株,即牧藏浦苯杆菌(Phenylobacterium muchangponense)sp. nov.。还提出了对 Phenylobacterium 属的修订描述。

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