Chen Hang, Thill Peter, Cao Jianshu
Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
J Chem Phys. 2016 May 7;144(17):175104. doi: 10.1063/1.4948461.
In biochemical systems, intrinsic noise may drive the system switch from one stable state to another. We investigate how kinetic switching between stable states in a bistable network is influenced by dynamic disorder, i.e., fluctuations in the rate coefficients. Using the geometric minimum action method, we first investigate the optimal transition paths and the corresponding minimum actions based on a genetic toggle switch model in which reaction coefficients draw from a discrete probability distribution. For the continuous probability distribution of the rate coefficient, we then consider two models of dynamic disorder in which reaction coefficients undergo different stochastic processes with the same stationary distribution. In one, the kinetic parameters follow a discrete Markov process and in the other they follow continuous Langevin dynamics. We find that regulation of the parameters modulating the dynamic disorder, as has been demonstrated to occur through allosteric control in bistable networks in the immune system, can be crucial in shaping the statistics of optimal transition paths, transition probabilities, and the stationary probability distribution of the network.
在生化系统中,内在噪声可能会驱使系统从一个稳定状态切换到另一个稳定状态。我们研究双稳态网络中稳定状态之间的动力学切换如何受到动态无序的影响,即速率系数的波动。使用几何最小作用量方法,我们首先基于一个遗传 Toggle 开关模型研究最优过渡路径和相应的最小作用量,在该模型中反应系数取自离散概率分布。对于速率系数的连续概率分布,我们接着考虑两种动态无序模型,其中反应系数经历具有相同平稳分布的不同随机过程。在一种模型中,动力学参数遵循离散马尔可夫过程,而在另一种模型中它们遵循连续朗之万动力学。我们发现,调节调制动态无序的参数,正如在免疫系统双稳态网络中已证明通过变构控制所发生的那样,对于塑造最优过渡路径的统计特性、过渡概率以及网络的平稳概率分布可能至关重要。