Pineda De Castro Luis Felipe, Dopson Mark, Friedman Ran
Computational Chemistry and Biochemistry research Group (CCBG), Department of Chemistry and Biomedical Sciences, Linnæus University, 391 82 Kalmar, Sweden.
Centre of Excellence "Biomaterials Chemistry", Linnæus University, 391 82 Kalmar, Sweden.
PLoS One. 2016 May 11;11(5):e0155287. doi: 10.1371/journal.pone.0155287. eCollection 2016.
In contrast to the majority of organisms that have cells bound by di-ester phospholipids, archaeal membranes consist of di- and tetraether phospholipids. Originating from organisms that withstand harsh conditions (e.g., low pH and a wide range of temperatures) such membranes have physical properties that make them attractive materials for biological research and biotechnological applications. We developed force-field parameters based on the widely used Generalized Amber Force Field (GAFF) to enable the study of anionic tetraether membranes of the model archaean Sulfolobus acidocaldarius by computer simulations. The simulations reveal that the physical properties of these unique membranes depend on the number of cyclopentane rings included in each lipid unit, and on the size of cations that are used to ensure charge neutrality. This suggests that the biophysical properties of Sulfolobus acidocaldarius cells depend not only on the compositions of their membranes but also on the media in which they grow.
与大多数由二酯磷脂结合细胞的生物体不同,古菌膜由二醚和四醚磷脂组成。这些膜起源于能够耐受恶劣条件(如低pH值和广泛温度范围)的生物体,其物理性质使其成为生物学研究和生物技术应用的有吸引力的材料。我们基于广泛使用的广义琥珀色力场(GAFF)开发了力场参数,以便通过计算机模拟研究模式古菌嗜酸热硫化叶菌的阴离子四醚膜。模拟结果表明,这些独特膜的物理性质取决于每个脂质单元中包含的环戊烷环数量,以及用于确保电荷中性的阳离子大小。这表明嗜酸热硫化叶菌细胞的生物物理性质不仅取决于其膜的组成,还取决于它们生长的介质。