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生物数据共享:生命科学领域经整理和众包的元数据标准、数据库及数据政策。

BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.

作者信息

McQuilton Peter, Gonzalez-Beltran Alejandra, Rocca-Serra Philippe, Thurston Milo, Lister Allyson, Maguire Eamonn, Sansone Susanna-Assunta

机构信息

Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford OX1 3QG, UK

Oxford e-Research Centre, University of Oxford, 7 Keble Road, Oxford OX1 3QG, UK.

出版信息

Database (Oxford). 2016 May 17;2016. doi: 10.1093/database/baw075. Print 2016.

Abstract

BioSharing (http://www.biosharing.org) is a manually curated, searchable portal of three linked registries. These resources cover standards (terminologies, formats and models, and reporting guidelines), databases, and data policies in the life sciences, broadly encompassing the biological, environmental and biomedical sciences. Launched in 2011 and built by the same core team as the successful MIBBI portal, BioSharing harnesses community curation to collate and cross-reference resources across the life sciences from around the world. BioSharing makes these resources findable and accessible (the core of the FAIR principle). Every record is designed to be interlinked, providing a detailed description not only on the resource itself, but also on its relations with other life science infrastructures. Serving a variety of stakeholders, BioSharing cultivates a growing community, to which it offers diverse benefits. It is a resource for funding bodies and journal publishers to navigate the metadata landscape of the biological sciences; an educational resource for librarians and information advisors; a publicising platform for standard and database developers/curators; and a research tool for bench and computer scientists to plan their work. BioSharing is working with an increasing number of journals and other registries, for example linking standards and databases to training material and tools. Driven by an international Advisory Board, the BioSharing user-base has grown by over 40% (by unique IP address), in the last year thanks to successful engagement with researchers, publishers, librarians, developers and other stakeholders via several routes, including a joint RDA/Force11 working group and a collaboration with the International Society for Biocuration. In this article, we describe BioSharing, with a particular focus on community-led curation.Database URL: https://www.biosharing.org.

摘要

生物资源共享平台(http://www.biosharing.org)是一个经过人工整理、可搜索的门户网站,它包含三个相互关联的注册库。这些资源涵盖生命科学领域的标准(术语、格式和模型以及报告指南)、数据库和数据政策,广泛涉及生物科学、环境科学和生物医学科学。生物资源共享平台于2011年推出,由与成功的MIBBI门户网站相同的核心团队打造,它利用社区整理来汇总和交叉引用来自世界各地生命科学领域的资源。生物资源共享平台使这些资源能够被找到并易于获取(这是FAIR原则的核心)。每条记录都设计为相互关联,不仅提供有关资源本身的详细描述,还提供其与其他生命科学基础设施关系的详细描述。生物资源共享平台服务于各种利益相关者,培育了一个不断壮大的社区,并为其提供了各种益处。它是资助机构和期刊出版商了解生物科学元数据领域的资源;是图书馆员和信息顾问的教育资源;是标准和数据库开发者/整理者的宣传平台;也是实验科学家和计算机科学家规划工作的研究工具。生物资源共享平台正在与越来越多的期刊和其他注册库合作,例如将标准和数据库与培训材料及工具相链接。在国际咨询委员会的推动下,生物资源共享平台的用户群体在过去一年中增长了超过40%(按唯一IP地址计算),这得益于通过多种途径成功地与研究人员、出版商、图书馆员、开发者和其他利益相关者进行互动,包括一个RDA/Force11联合工作组以及与国际生物信息整理学会的合作。在本文中,我们将介绍生物资源共享平台,特别关注社区主导的整理工作。数据库网址:https://www.biosharing.org

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74d2/4869797/dc1062daa9e2/baw075f1p.jpg

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