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体内蛋白质-蛋白质相互作用的分析技术

Techniques for the Analysis of Protein-Protein Interactions in Vivo.

作者信息

Xing Shuping, Wallmeroth Niklas, Berendzen Kenneth W, Grefen Christopher

机构信息

University of Tübingen, ZMBP Developmental Genetics (S.X., N.W., C.G.) and ZMBP Central Facilities (K.W.B.), D-72076 Tuebingen, Germany.

University of Tübingen, ZMBP Developmental Genetics (S.X., N.W., C.G.) and ZMBP Central Facilities (K.W.B.), D-72076 Tuebingen, Germany

出版信息

Plant Physiol. 2016 Jun;171(2):727-58. doi: 10.1104/pp.16.00470. Epub 2016 Apr 25.

Abstract

Identifying key players and their interactions is fundamental for understanding biochemical mechanisms at the molecular level. The ever-increasing number of alternative ways to detect protein-protein interactions (PPIs) speaks volumes about the creativity of scientists in hunting for the optimal technique. PPIs derived from single experiments or high-throughput screens enable the decoding of binary interactions, the building of large-scale interaction maps of single organisms, and the establishment of cross-species networks. This review provides a historical view of the development of PPI technology over the past three decades, particularly focusing on in vivo PPI techniques that are inexpensive to perform and/or easy to implement in a state-of-the-art molecular biology laboratory. Special emphasis is given to their feasibility and application for plant biology as well as recent improvements or additions to these established techniques. The biology behind each method and its advantages and disadvantages are discussed in detail, as are the design, execution, and evaluation of PPI analysis. We also aim to raise awareness about the technological considerations and the inherent flaws of these methods, which may have an impact on the biological interpretation of PPIs. Ultimately, we hope this review serves as a useful reference when choosing the most suitable PPI technique.

摘要

识别关键参与者及其相互作用是在分子水平上理解生化机制的基础。检测蛋白质-蛋白质相互作用(PPI)的替代方法数量不断增加,这充分说明了科学家在寻找最佳技术方面的创造力。来自单个实验或高通量筛选的PPI能够解码二元相互作用、构建单个生物体的大规模相互作用图谱以及建立跨物种网络。本综述提供了过去三十年PPI技术发展的历史视角,特别关注那些在最先进的分子生物学实验室中执行成本低廉和/或易于实施的体内PPI技术。特别强调了它们在植物生物学中的可行性和应用,以及对这些既定技术的最新改进或补充。详细讨论了每种方法背后的生物学原理及其优缺点,以及PPI分析的设计、执行和评估。我们还旨在提高对这些方法的技术考量和固有缺陷的认识,这些可能会对PPI的生物学解释产生影响。最终,我们希望本综述在选择最合适的PPI技术时能成为一份有用的参考资料。

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