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森林生物炭的微生物群落与宏基因组

The microbiomes and metagenomes of forest biochars.

作者信息

Noyce Genevieve L, Winsborough Carolyn, Fulthorpe Roberta, Basiliko Nathan

机构信息

Department of Geography, University of Toronto, Toronto, ON, Canada.

Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, ON, Canada.

出版信息

Sci Rep. 2016 May 23;6:26425. doi: 10.1038/srep26425.

Abstract

Biochar particles have been hypothesized to provide unique microhabitats for a portion of the soil microbial community, but few studies have systematically compared biochar communities to bulk soil communities. Here, we used a combination of sequencing techniques to assess the taxonomic and functional characteristics of microbial communities in four-year-old biochar particles and in adjacent soils across three forest environments. Though effects varied between sites, the microbial community living in and around the biochar particles had significantly lower prokaryotic diversity and higher eukaryotic diversity than the surrounding soil. In particular, the biochar bacterial community had proportionally lower abundance of Acidobacteria, Planctomycetes, and β-Proteobacteria taxa, compared to the soil, while the eukaryotic biochar community had an 11% higher contribution of protists belonging to the Aveolata superphylum. Additionally, we were unable to detect a consistent biochar effect on the genetic functional potential of these microbial communities for the subset of the genetic data for which we were able to assign functions through MG-RAST. Overall, these results show that while biochar particles did select for a unique subset of the biota found in adjacent soils, effects on the microbial genetic functional potential appeared to be specific to contrasting forest soil environments.

摘要

生物炭颗粒被认为可为部分土壤微生物群落提供独特的微生境,但很少有研究系统地比较生物炭群落与大块土壤群落。在此,我们结合测序技术,评估了三种森林环境中四年生生物炭颗粒及其相邻土壤中微生物群落的分类学和功能特征。尽管不同地点的影响有所不同,但生活在生物炭颗粒内部及周围的微生物群落,其原核生物多样性显著低于周围土壤,而真核生物多样性则高于周围土壤。具体而言,与土壤相比,生物炭细菌群落中酸杆菌门、浮霉菌门和β-变形菌纲类群的丰度相对较低,而真核生物炭群落中属于囊泡虫总门的原生生物贡献高出11%。此外,对于我们能够通过MG-RAST分配功能的那部分遗传数据,我们未能检测到生物炭对这些微生物群落的遗传功能潜力产生一致的影响。总体而言,这些结果表明,虽然生物炭颗粒确实选择了相邻土壤中生物群的一个独特子集,但对微生物遗传功能潜力的影响似乎因森林土壤环境的不同而有所差异。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6330/4876420/8354345ea453/srep26425-f1.jpg

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