Carotenuto Felicia, Albertini Maria C, Coletti Dario, Vilmercati Alessandra, Campanella Luigi, Darzynkiewicz Zbigniew, Teodori Laura
Diagnostics and Metrology (FSN-TECFIS-DIM), ENEA, C.R. Frascati, Rome 00044, Italy.
Department Clinical Sciences and Translational Medicine, University ofRome Tor Vergata, Rome 00133, Italy.
Int J Mol Sci. 2016 May 19;17(5):752. doi: 10.3390/ijms17050752.
The DNA damage response (DDR) is a molecular mechanism that cells have evolved to sense DNA damage (DD) to promote DNA repair, or to lead to apoptosis, or cellular senescence if the damage is too extensive. Recent evidence indicates that microRNAs (miRs) play a critical role in the regulation of DDR. Dietary bioactive compounds through miRs may affect activity of numerous genes. Among the most studied bioactive compounds modulating expression of miRs are epi-gallocatechin-3-gallate, curcumin, resveratrol and n3-polyunsaturated fatty acids. To compare the impact of these dietary compounds on DD/DDR network modulation, we performed a literature search and an in silico analysis by the DIANA-mirPathv3 software. The in silico analysis allowed us to identify pathways shared by different miRs involved in DD/DDR vis-à-vis the specific compounds. The results demonstrate that certain miRs (e.g., -146, -21) play a central role in the interplay among DD/DDR and the bioactive compounds. Furthermore, some specific pathways, such as "fatty acids biosynthesis/metabolism", "extracellular matrix-receptor interaction" and "signaling regulating the pluripotency of stem cells", appear to be targeted by most miRs affected by the studied compounds. Since DD/DDR and these pathways are strongly related to aging and carcinogenesis, the present in silico results of our study suggest that monitoring the induction of specific miRs may provide the means to assess the antiaging and chemopreventive properties of particular dietary compounds.
DNA损伤反应(DDR)是细胞进化出的一种分子机制,用于感知DNA损伤(DD),以促进DNA修复,或者在损伤过于广泛时导致细胞凋亡或细胞衰老。最近的证据表明,微小RNA(miR)在DDR的调节中起关键作用。膳食生物活性化合物可能通过miR影响众多基因的活性。在研究最多的调节miR表达的生物活性化合物中,有表没食子儿茶素-3-没食子酸酯、姜黄素、白藜芦醇和n3-多不饱和脂肪酸。为了比较这些膳食化合物对DD/DDR网络调节的影响,我们通过DIANA-mirPathv3软件进行了文献检索和计算机分析。计算机分析使我们能够识别不同miR在DD/DDR中相对于特定化合物所共有的途径。结果表明,某些miR(如-146、-21)在DD/DDR与生物活性化合物之间的相互作用中起核心作用。此外,一些特定途径,如“脂肪酸生物合成/代谢”、“细胞外基质-受体相互作用”和“调节干细胞多能性的信号传导”,似乎是受研究化合物影响的大多数miR的作用靶点。由于DD/DDR与这些途径与衰老和致癌作用密切相关,我们研究的当前计算机分析结果表明,监测特定miR的诱导可能为评估特定膳食化合物的抗衰老和化学预防特性提供手段。