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谱系特异性基因组学:人类基因组中的频繁产生与消亡:人类基因组包含许多由序列和功能更新所产生的谱系特异性元件。

Lineage-specific genomics: Frequent birth and death in the human genome: The human genome contains many lineage-specific elements created by both sequence and functional turnover.

作者信息

Young Robert S

机构信息

MRC Human Genetics Unit, MRC IGMM, University of Edinburgh, Edinburgh, UK.

出版信息

Bioessays. 2016 Jul;38(7):654-63. doi: 10.1002/bies.201500192. Epub 2016 May 27.

Abstract

Frequent evolutionary birth and death events have created a large quantity of biologically important, lineage-specific DNA within mammalian genomes. The birth and death of DNA sequences is so frequent that the total number of these insertions and deletions in the human population remains unknown, although there are differences between these groups, e.g. transposable elements contribute predominantly to sequence insertion. Functional turnover - where the activity of a locus is specific to one lineage, but the underlying DNA remains conserved - can also drive birth and death. However, this does not appear to be a major driver of divergent transcriptional regulation. Both sequence and functional turnover have contributed to the birth and death of thousands of functional promoters in the human and mouse genomes. These findings reveal the pervasive nature of evolutionary birth and death and suggest that lineage-specific regions may play an important but previously underappreciated role in human biology and disease.

摘要

频繁的进化性产生和消亡事件在哺乳动物基因组中创造了大量具有生物学重要性的、特定谱系的DNA。DNA序列的产生和消亡非常频繁,以至于尽管这些群体之间存在差异,例如转座元件主要导致序列插入,但人类群体中这些插入和缺失的总数仍然未知。功能转换——一个位点的活性特定于一个谱系,但基础DNA保持保守——也可以驱动产生和消亡。然而,这似乎并不是转录调控差异的主要驱动因素。序列和功能转换都促成了人类和小鼠基因组中数千个功能启动子的产生和消亡。这些发现揭示了进化性产生和消亡的普遍性,并表明特定谱系区域可能在人类生物学和疾病中发挥重要但以前未被充分认识的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/805e/4949557/3312e6dcf6de/BIES-38-654-g002.jpg

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