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序列保守性的“灰色地带”中的生物学功能。

Biological function in the twilight zone of sequence conservation.

机构信息

MRC Human Genetics Unit, The Institute of Genetics and Molecular Medicine, University of Edinburgh, Western General Hospital, Crewe Road, Edinburgh, EH4 2XU, UK.

出版信息

BMC Biol. 2017 Aug 16;15(1):71. doi: 10.1186/s12915-017-0411-5.

DOI:10.1186/s12915-017-0411-5
PMID:28814299
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5558704/
Abstract

Strong DNA conservation among divergent species is an indicator of enduring functionality. With weaker sequence conservation we enter a vast 'twilight zone' in which sequence subject to transient or lower constraint cannot be distinguished easily from neutrally evolving, non-functional sequence. Twilight zone functional sequence is illuminated instead by principles of selective constraint and positive selection using genomic data acquired from within a species' population. Application of these principles reveals that despite being biochemically active, most twilight zone sequence is not functional.

摘要

在不同物种中,高度保守的 DNA 是其功能持久的一个指标。随着序列保守性的减弱,我们进入了一个广阔的“暮光区”,在这个区域中,暂时或较低约束的序列与中性进化的非功能序列很难区分。相反,通过在一个物种的种群中获得的基因组数据,利用选择约束和正选择的原则,可以照亮暮光区功能序列。这些原则的应用表明,尽管大多数暮光区序列具有生物化学活性,但它们并没有功能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/ee137a918dc3/12915_2017_411_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/1cc88a141ff6/12915_2017_411_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/2315e8648169/12915_2017_411_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/cda1f0b24d12/12915_2017_411_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/b9a0d12e2a76/12915_2017_411_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/27e1712196d4/12915_2017_411_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/ee137a918dc3/12915_2017_411_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/1cc88a141ff6/12915_2017_411_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/2315e8648169/12915_2017_411_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/cda1f0b24d12/12915_2017_411_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/b9a0d12e2a76/12915_2017_411_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/27e1712196d4/12915_2017_411_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18c1/5558704/ee137a918dc3/12915_2017_411_Fig6_HTML.jpg

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