免疫分枝杆菌模式菌株CCUG 47286的全基因组序列
Complete Genome Sequence of the Mycobacterium immunogenum Type Strain CCUG 47286.
作者信息
Jaén-Luchoro Daniel, Seguí Carolina, Aliaga-Lozano Francisco, Salvà-Serra Francisco, Busquets Antonio, Gomila Margarita, Ramírez Antonio, Ruiz Mikel, Moore Edward R B, Lalucat Jorge, Bennasar-Figueras Antoni
机构信息
Microbiologia, Departament de Biologia, Universitat de les Illes Balears, Palma de Mallorca, Illes Balears, Spain.
Microbiologia, Departament de Biologia, Universitat de les Illes Balears, Palma de Mallorca, Illes Balears, Spain Microbiologia, Clínica Rotger, Palma de Mallorca, Illes Balears, Spain.
出版信息
Genome Announc. 2016 May 26;4(3):e00401-16. doi: 10.1128/genomeA.00401-16.
Abstract
Here, we report the complete genome sequence of Mycobacterium immunogenum type strain CCUG 47286, a nontuberculous mycobacterium. The whole genome has 5,573,781 bp and covers as many as 5,484 predicted genes. This genome contributes to the task of closing the still-existing gap of genomes of rapidly growing mycobacterial type strains.
摘要
在此，我们报告非结核分枝杆菌免疫原性分枝杆菌模式菌株CCUG 47286的完整基因组序列。全基因组有5,573,781个碱基对，包含多达5,484个预测基因。该基因组有助于填补快速生长分枝杆菌模式菌株基因组中仍然存在的空白。
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本文引用的文献
1
Update on RefSeq microbial genomes resources.
Nucleic Acids Res. 2015 Jan;43(Database issue):D599-605. doi: 10.1093/nar/gku1062. Epub 2014 Dec 15.
2
SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information.
BMC Bioinformatics. 2014 Jun 20;15:211. doi: 10.1186/1471-2105-15-211.
3
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.
BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.
4
Toward almost closed genomes with GapFiller.
Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56.
5
Disseminated Mycobacterium immunogenum infection presenting with septic shock and skin lesions in a renal transplant recipient.
Transpl Infect Dis. 2012 Aug;14(4):415-21. doi: 10.1111/j.1399-3062.2012.00730.x. Epub 2012 May 1.
6
Mycobacterium immunogenum skin infections: two different presentations.
Int J Dermatol. 2010 Aug;49(8):941-4. doi: 10.1111/j.1365-4632.2009.04363.x.
7
ABySS: a parallel assembler for short read sequence data.
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
8
Mesotherapy-associated outbreak caused by Mycobacterium immunogenum.
Emerg Infect Dis. 2009 Feb;15(2):357-9. doi: 10.3201/eid1502.081125.
9
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
10
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
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