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17株快速生长非结核分枝杆菌的全基因组序列

Complete Genome Sequences of 17 Rapidly Growing Nontuberculous Mycobacterial Strains.

作者信息

Caverly Lindsay J, Spilker Theodore, LiPuma John J

机构信息

Department of Pediatrics, University of Michigan Medical School, Ann Arbor, Michigan, USA

Department of Pediatrics, University of Michigan Medical School, Ann Arbor, Michigan, USA.

出版信息

Genome Announc. 2016 Sep 22;4(5):e01009-16. doi: 10.1128/genomeA.01009-16.

DOI:10.1128/genomeA.01009-16
PMID:27660787
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5034138/
Abstract

We report the complete genome sequences of 17 rapidly growing nontuberculous mycobacterial (NTM) strains, including 16 Mycobacterium abscessus complex strains and one M. immunogenum strain. These sequences add value to studies of the genetic diversity of rapidly growing NTM strains recovered from human specimens.

摘要

我们报告了17株快速生长的非结核分枝杆菌(NTM)菌株的全基因组序列,其中包括16株脓肿分枝杆菌复合群菌株和1株免疫分枝杆菌菌株。这些序列为从人类标本中分离出的快速生长NTM菌株的遗传多样性研究提供了价值。

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本文引用的文献

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Genome Announc. 2016 May 26;4(3):e00401-16. doi: 10.1128/genomeA.00401-16.
2
Complete genome sequence and comparative genomic analysis of Mycobacterium massiliense JCM 15300 in the Mycobacterium abscessus group reveal a conserved genomic island MmGI-1 related to putative lipid metabolism.脓肿分枝杆菌群中马赛分枝杆菌JCM 15300的全基因组序列及比较基因组分析揭示了一个与假定脂质代谢相关的保守基因组岛MmGI-1。
PLoS One. 2014 Dec 11;9(12):e114848. doi: 10.1371/journal.pone.0114848. eCollection 2014.
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The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.用于数千个种内微生物基因组的快速核心基因组比对和可视化的Harvest套件。
Genome Biol. 2014;15(11):524. doi: 10.1186/s13059-014-0524-x.
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Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
Phylogenomics of Brazilian epidemic isolates of Mycobacterium abscessus subsp. bolletii reveals relationships of global outbreak strains.巴西脓肿分枝杆菌亚种 bolletii 流行分离株的系统基因组学分析揭示了全球暴发菌株的关系。
Infect Genet Evol. 2013 Dec;20:292-7. doi: 10.1016/j.meegid.2013.09.012. Epub 2013 Sep 18.
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Lancet. 2013 May 4;381(9877):1551-60. doi: 10.1016/S0140-6736(13)60632-7. Epub 2013 Mar 29.
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