文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期，新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

GenVisR: Genomic Visualizations in R.

作者信息

Skidmore Zachary L, Wagner Alex H, Lesurf Robert, Campbell Katie M, Kunisaki Jason, Griffith Obi L, Griffith Malachi

机构信息

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.

McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA Department of Medicine Siteman Cancer Center Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.

出版信息

Bioinformatics. 2016 Oct 1;32(19):3012-4. doi: 10.1093/bioinformatics/btw325. Epub 2016 Jun 10.

DOI:10.1093/bioinformatics/btw325
PMID:27288499
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5039916/
Abstract

UNLABELLED: Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor. AVAILABILITY AND IMPLEMENTATION: GenVisR is an R package available via Bioconductor (https://bioconductor.org/packages/GenVisR) under GPLv3. Support is available via GitHub (https://github.com/griffithlab/GenVisR/issues) and the Bioconductor support website. CONTACTS: obigriffith@wustl.edu or mgriffit@wustl.edu SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c578/5039916/3d377da64075/btw325f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c578/5039916/3d377da64075/btw325f1p.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c578/5039916/3d377da64075/btw325f1p.jpg

相似文献

[1]
GenVisR: Genomic Visualizations in R.

Bioinformatics. 2016-10-1

[2]
Exploring the Genomic Landscape of Cancer Patient Cohorts with GenVisR.

Curr Protoc. 2021-9

[3]
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.

Bioinformatics. 2016-4-15

[4]
HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.

Bioinformatics. 2016-3-24

[5]
PanViz: interactive visualization of the structure of functionally annotated pangenomes.

Bioinformatics. 2017-4-1

[6]
Plotgardener: cultivating precise multi-panel figures in R.

Bioinformatics. 2022-3-28

[7]
Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.

Bioinformatics. 2014-10

[8]
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.

Bioinformatics. 2013-5-24

[9]
rGREAT: an R/bioconductor package for functional enrichment on genomic regions.

Bioinformatics. 2023-1-1

[10]
karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data.

Bioinformatics. 2017-10-1

引用本文的文献

[1]
MED12-STAT1-TAP2 axis regulates CD8 + T cell cytotoxicity and mediates immunotherapy outcome in non-small cell lung cancer.

Funct Integr Genomics. 2025-9-1

[2]
Genome-wide in vivo CRISPR screens identify GATOR1 complex as a tumor suppressor in Myc-driven lymphoma.

Nat Commun. 2025-8-21

[3]
Demonstrating the clinical utility of genomic profiling using cerebrospinal fluid to inform management of central nervous system tumors - a meta analysis of the literature.

J Liq Biopsy. 2025-7-25

[4]
A lipid metabolism-related gene signature predicts prognosis after tamoxifen treatment in ER + breast cancer and reflects tumor microenvironment heterogeneity through single-cell analysis.

BMC Med Genomics. 2025-7-31

[5]
A prognostic model for stomach adenocarcinoma based on hypoxia- and immune-related genes.

Arch Med Sci. 2023-6-17

[6]
Construction of the graph genomes of Takifugu provides novel insights into the genomic mechanisms of population structure and migratory traits.

BMC Biol. 2025-7-1

[7]
Evaluation of the diagnostic concordance of FDA-approved PD-L1 assays in clear cell renal cell carcinoma.

Sci Rep. 2025-7-1

[8]
Whole genome sequencing revealed esophageal squamous cell carcinoma related biomarkers.

PLoS One. 2025-6-26

[9]
Molecular subtypes based on ferroptosis-related genes and tumor microenvironment infiltration characterization in small cell lung cancer.

Front Immunol. 2025-5-13

[10]
Common bean pan-genome reveals abundant variation patterns and relationships of stress response genes and pathways.

BMC Genomics. 2025-5-16

本文引用的文献

[1]
A genomic analysis of Philadelphia chromosome-negative AML arising in patients with CML.

Blood Cancer J. 2016-4-8

[2]
Exploring genomic alteration in pediatric cancer using ProteinPaint.

Nat Genet. 2016-1

[3]
A Phase I Trial of BKM120 (Buparlisib) in Combination with Fulvestrant in Postmenopausal Women with Estrogen Receptor-Positive Metastatic Breast Cancer.

Clin Cancer Res. 2016-4-1

[4]
DGIdb 2.0: mining clinically relevant drug-gene interactions.

Nucleic Acids Res. 2016-1-4

[5]
Genome Modeling System: A Knowledge Management Platform for Genomics.

PLoS Comput Biol. 2015-7-9

[6]
Prognostic significance of acquired copy-neutral loss of heterozygosity in acute myeloid leukemia.

Cancer. 2015-5-29

[7]
MAGI: visualization and collaborative annotation of genomic aberrations.

Nat Methods. 2015-6

[8]
Organizing knowledge to enable personalization of medicine in cancer.

Genome Biol. 2014-8-27

[9]
Modeling precision treatment of breast cancer.

Genome Biol. 2013

[10]
Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers.

Genome Med. 2013-10-11

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索