PanViz：功能注释泛基因组结构的交互式可视化
PanViz: interactive visualization of the structure of functionally annotated pangenomes.
作者信息
Pedersen Thomas Lin, Nookaew Intawat, Wayne Ussery David, Månsson Maria
机构信息
Center for Biological Sequence Analysis, Department of Systems Biology, The Technical University of Denmark, DK-2800 Lyngby, Denmark.
Assays, Culture and Enzymes Division, DK-2970 Hørsholm, Denmark.
出版信息
Bioinformatics. 2017 Apr 1;33(7):1081-1082. doi: 10.1093/bioinformatics/btw761.
SUMMARY
PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes are selected, as well as comparisons of individual genomes to pangenomes with gene ontology based navigation of gene groups. Furthermore it allows for rich and complex visual querying of gene groups in the pangenome. PanViz visualizations require no external programs and are easily sharable, allowing for rapid pangenome analyses.
AVAILABILITY AND IMPLEMENTATION
PanViz is written entirely in JavaScript and is available on https://github.com/thomasp85/PanViz . A companion R package that facilitates the creation of PanViz visualizations from a range of data formats is released through Bioconductor and is available at https://bioconductor.org/packages/PanVizGenerator .
CONTACT
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
摘要
PanViz是一种用于泛基因组分析的新型交互式可视化工具。PanViz能够在选择不同的泛基因组子集时可视化基因组群（跨基因组的相似基因群）分类的变化，还能通过基于基因本体的基因组群导航将单个基因组与泛基因组进行比较。此外，它还支持对泛基因组中的基因组群进行丰富而复杂的可视化查询。PanViz可视化无需外部程序，且易于共享，可实现快速的泛基因组分析。
可用性与实现方式
PanViz完全用JavaScript编写，可在https://github.com/thomasp85/PanViz获取。一个配套的R包通过Bioconductor发布，可从一系列数据格式创建PanViz可视化，该R包可在https://bioconductor.org/packages/PanVizGenerator获取。
联系方式
补充信息
补充数据可在《生物信息学》在线获取。
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