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与氧化还原辅助因子MYW的相互作用以及真核过氧化氢酶-过氧化物酶中一个可移动精氨酸的功能作用

Interaction with the Redox Cofactor MYW and Functional Role of a Mobile Arginine in Eukaryotic Catalase-Peroxidase.

作者信息

Gasselhuber Bernhard, Graf Michael M H, Jakopitsch Christa, Zamocky Marcel, Nicolussi Andrea, Furtmüller Paul G, Oostenbrink Chris, Carpena Xavi, Obinger Christian

机构信息

Department of Chemistry, Division of Biochemistry, BOKU-University of Natural Resources and Life Sciences , Muthgasse 18, A-1190 Vienna, Austria.

Department of Material Sciences and Process Engineering, Institute for Molecular Modeling and Simulation, BOKU-University of Natural Resources and Life Sciences , Muthgasse 18, A-1190 Vienna, Austria.

出版信息

Biochemistry. 2016 Jun 28;55(25):3528-41. doi: 10.1021/acs.biochem.6b00436. Epub 2016 Jun 16.

Abstract

Catalase-peroxidases (KatGs) are unique bifunctional heme peroxidases with an additional posttranslationally formed redox-active Met-Tyr-Trp cofactor that is essential for catalase activity. On the basis of studies of bacterial KatGs, controversial mechanisms of hydrogen peroxide oxidation were proposed. The recent discovery of eukaryotic KatGs with differing pH optima of catalase activity now allows us to scrutinize those postulated reaction mechanisms. In our study, secreted KatG from the fungus Magnaporthe grisea (MagKatG2) was used to analyze the role of a remote KatG-typical mobile arginine that was shown to interact with the Met-Tyr-Trp adduct in a pH-dependent manner in bacterial KatGs. Here we present crystal structures of MagKatG2 at pH 3.0, 5.5, and 7.0 and investigate the mobility of Arg461 by molecular dynamics simulation. Data suggest that at pH ≥4.5 Arg461 mostly interacts with the deprotonated adduct Tyr. Elimination of Arg461 by mutation to Ala slightly increases the thermal stability but does not alter the active site architecture or the kinetics of cyanide binding. However, the variant Arg461Ala lost the wild-type-typical optimum of catalase activity at pH 5.25 (kcat = 6450 s(-1)) but exhibits a broad plateau between pH 4.5 and 7.5 (kcat = 270 s(-1) at pH 5.5). Moreover, significant differences in the kinetics of interconversion of redox intermediates of wild-type and mutant protein mixed with either peroxyacetic acid or hydrogen peroxide are observed. These findings together with published data from bacterial KatGs allow us to propose a role of Arg461 in the H2O2 oxidation reaction of KatG.

摘要

过氧化氢酶 - 过氧化物酶(KatGs)是独特的双功能血红素过氧化物酶,具有一个额外的翻译后形成的对过氧化氢酶活性至关重要的氧化还原活性甲硫氨酸 - 酪氨酸 - 色氨酸辅因子。基于对细菌KatGs的研究,有人提出了关于过氧化氢氧化的有争议的机制。最近发现的具有不同过氧化氢酶活性最适pH值的真核KatGs,现在使我们能够仔细研究那些假定的反应机制。在我们的研究中,来自稻瘟病菌(Magnaporthe grisea)的分泌型KatG(MagKatG2)被用于分析一个远距离的典型KatG移动精氨酸的作用,该精氨酸在细菌KatGs中被证明以pH依赖的方式与甲硫氨酸 - 酪氨酸 - 色氨酸加合物相互作用。在这里,我们展示了MagKatG2在pH 3.0、5.5和7.0时的晶体结构,并通过分子动力学模拟研究了精氨酸461(Arg461)的流动性。数据表明,在pH≥4.5时,Arg461主要与去质子化的加合物酪氨酸相互作用。通过将Arg461突变为丙氨酸来消除它,略微提高了热稳定性,但没有改变活性位点结构或氰化物结合的动力学。然而,变体Arg461Ala在pH 5.25时失去了野生型典型的过氧化氢酶活性最佳值(kcat = 6450 s(-1)),但在pH 4.5至7.5之间呈现出一个宽平台(在pH 5.5时kcat = 270 s(-1))。此外,观察到野生型和突变型蛋白质与过氧乙酸或过氧化氢混合时,氧化还原中间体相互转化动力学的显著差异。这些发现与来自细菌KatGs的已发表数据一起,使我们能够提出Arg461在KatG的H2O2氧化反应中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/118d/4928148/5fe5b1f6de42/bi-2016-00436j_0009.jpg

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