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克罗恩病发病率的网络建模

Network Modeling of Crohn's Disease Incidence.

作者信息

Victor Jean-Marc, Debret Gaëlle, Lesne Annick, Pascoe Leigh, Carrivain Pascal, Wainrib Gilles, Hugot Jean-Pierre

机构信息

Laboratoire de Physique Théorique de la Matière Condensée, UMR 7600 Centre National de la Recherche Scientifique & Université Pierre et Marie Curie-Paris 6, Sorbonne Universités, Paris, France.

Institut de Génétique Moléculaire de Montpellier, Centre National de la Recherche Scientifique UMR 5535, Université de Montpellier, Montpellier, France.

出版信息

PLoS One. 2016 Jun 16;11(6):e0156138. doi: 10.1371/journal.pone.0156138. eCollection 2016.

Abstract

BACKGROUND

Numerous genetic and environmental risk factors play a role in human complex genetic disorders (CGD). However, their complex interplay remains to be modelled and explained in terms of disease mechanisms.

METHODS AND FINDINGS

Crohn's Disease (CD) was modeled as a modular network of patho-physiological functions, each summarizing multiple gene-gene and gene-environment interactions. The disease resulted from one or few specific combinations of module functional states. Network aging dynamics was able to reproduce age-specific CD incidence curves as well as their variations over the past century in Western countries. Within the model, we translated the odds ratios (OR) associated to at-risk alleles in terms of disease propensities of the functional modules. Finally, the model was successfully applied to other CGD including ulcerative colitis, ankylosing spondylitis, multiple sclerosis and schizophrenia.

CONCLUSION

Modeling disease incidence may help to understand disease causative chains, to delineate the potential of personalized medicine, and to monitor epidemiological changes in CGD.

摘要

背景

众多遗传和环境风险因素在人类复杂遗传疾病(CGD)中发挥作用。然而,它们之间复杂的相互作用仍有待根据疾病机制进行建模和解释。

方法与结果

将克罗恩病(CD)建模为一个病理生理功能的模块化网络,每个模块总结了多个基因-基因和基因-环境相互作用。该疾病由模块功能状态的一种或几种特定组合导致。网络老化动态能够重现特定年龄的CD发病率曲线及其在西方国家过去一个世纪中的变化。在模型中,我们根据功能模块的疾病倾向来解释与风险等位基因相关的优势比(OR)。最后,该模型成功应用于其他CGD,包括溃疡性结肠炎、强直性脊柱炎、多发性硬化症和精神分裂症。

结论

对疾病发病率进行建模可能有助于理解疾病因果链,描绘个性化医疗的潜力,并监测CGD的流行病学变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3e8e/4911211/1f156c0958e4/pone.0156138.g001.jpg

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