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预测药物不良反应的计算方法综述

A Survey on Computational Approaches to Predicting Adverse Drug Reactions.

作者信息

Chen Yun-Gu, Wang Yin-Ying, Zhao Xing-Ming

机构信息

Department of Computer Science and Technology, Tongji University, Shanghai 201804, China..

出版信息

Curr Top Med Chem. 2016;16(30):3629-3635. doi: 10.2174/1568026616666160530182013.

DOI:10.2174/1568026616666160530182013
PMID:27334199
Abstract

Adverse drug reactions (ADRs) are the leading factors of drug attrition in drug development and post-market drug withdrawal. The identification of potential ADRs can help prevent the failure of drug discovery and improve development efficiency. Furthermore, elucidating possible ADRs for known drugs can help better understand the mechanism of drug actions and even find new indications of old drugs. Unfortunately, only the ADRs of some well-studied drugs are available and our knowledge about ADRs of available drugs is far from complete. Recently, with more structural and omics data available, some computational approaches have been developed for predicting drug ADRs. In this review, we present a survey on the recent progresses on computational methodologies that have been developed for ADR prediction based on various kinds of data, and some ADR related resources are also introduced.

摘要

药物不良反应(ADR)是药物研发中药物淘汰以及上市后药物撤市的主要因素。识别潜在的药物不良反应有助于预防药物研发失败并提高研发效率。此外,阐明已知药物可能的不良反应有助于更好地理解药物作用机制,甚至发现老药的新适应症。遗憾的是,仅有一些研究充分的药物的不良反应信息可得,而且我们对现有药物不良反应的了解还远不完整。近年来,随着更多结构和组学数据的出现,已开发出一些用于预测药物不良反应的计算方法。在本综述中,我们对基于各类数据开发的用于药物不良反应预测的计算方法的最新进展进行了综述,并介绍了一些与药物不良反应相关的资源。

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引用本文的文献

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A Data-Driven Medical Decision Framework for Associating Adverse Drug Events with Drug-Drug Interaction Mechanisms.基于数据的药物不良事件与药物相互作用机制关联的医学决策框架。
J Healthc Eng. 2022 Mar 3;2022:9132477. doi: 10.1155/2022/9132477. eCollection 2022.
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CeDR Atlas: a knowledgebase of cellular drug response.CeDR 图谱:细胞药物反应知识库。
Nucleic Acids Res. 2022 Jan 7;50(D1):D1164-D1171. doi: 10.1093/nar/gkab897.
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Literature based discovery of alternative TCM medicine for adverse reactions to depression drugs.
基于文献的发现:用于治疗抗抑郁药物不良反应的替代中药。
BMC Bioinformatics. 2020 Oct 26;21(Suppl 5):405. doi: 10.1186/s12859-020-03735-8.
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Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases.机器学习工作流程通过药物-基因相互作用增强药物不良反应 (ADR) 的预测:在皮肤病药物中的应用。
Sci Rep. 2017 Jun 16;7(1):3690. doi: 10.1038/s41598-017-03914-3.