Department of Chemistry, Chemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.
Division of Cardiovascular Medicine, Radcliffe Department of Medicine, Wellcome Trust Centre for Human Genetics, Roosevelt Drive, Oxford OX3 7BN, UK.
Nat Commun. 2016 Jun 23;7:11974. doi: 10.1038/ncomms11974.
While the oxygen-dependent reversal of lysine N(ɛ)-methylation is well established, the existence of bona fide N(ω)-methylarginine demethylases (RDMs) is controversial. Lysine demethylation, as catalysed by two families of lysine demethylases (the flavin-dependent KDM1 enzymes and the 2-oxoglutarate- and oxygen-dependent JmjC KDMs, respectively), proceeds via oxidation of the N-methyl group, resulting in the release of formaldehyde. Here we report detailed biochemical studies clearly demonstrating that, in purified form, a subset of JmjC KDMs can also act as RDMs, both on histone and non-histone fragments, resulting in formaldehyde release. RDM catalysis is studied using peptides of wild-type sequences known to be arginine-methylated and sequences in which the KDM's methylated target lysine is substituted for a methylated arginine. Notably, the preferred sequence requirements for KDM and RDM activity vary even with the same JmjC enzymes. The demonstration of RDM activity by isolated JmjC enzymes will stimulate efforts to detect biologically relevant RDM activity.
虽然赖氨酸 N(ɛ)-甲基化的氧依赖性逆转已得到充分证实,但真正的 N(ω)-甲基精氨酸脱甲基酶 (RDM) 的存在仍存在争议。由两种赖氨酸去甲基酶家族(黄素依赖性 KDM1 酶和 2-氧戊二酸和氧依赖性 JmjC KDMs)催化的赖氨酸去甲基化,通过 N-甲基的氧化进行,导致甲醛的释放。在这里,我们报告了详细的生化研究,清楚地表明,在纯化形式下,一部分 JmjC KDM 也可以作为 RDM,作用于组蛋白和非组蛋白片段,导致甲醛的释放。使用已知被精氨酸甲基化的野生型序列的肽和其中 KDM 的甲基化靶赖氨酸被甲基化精氨酸取代的序列来研究 RDM 催化作用。值得注意的是,即使使用相同的 JmjC 酶,KDM 和 RDM 活性的首选序列要求也会有所不同。分离的 JmjC 酶的 RDM 活性的证明将激发人们努力检测具有生物学相关性的 RDM 活性。