Research Center for Infectious Diseases (ZINF), University of Würzburg, Josef-Schneider-Straße 2 / Bau D15, 97080 Würzburg, Germany.
Microbiol Spectr. 2016 Jun;4(3). doi: 10.1128/microbiolspec.VMBF-0028-2015.
Bacterial pathogens must endure or adapt to different environments and stresses during transmission and infection. Posttranscriptional gene expression control by regulatory RNAs, such as small RNAs and riboswitches, is now considered central to adaptation in many bacteria, including pathogens. The study of RNA-based regulation (riboregulation) in pathogenic species has provided novel insight into how these bacteria regulate virulence gene expression. It has also uncovered diverse mechanisms by which bacterial small RNAs, in general, globally control gene expression. Riboregulators as well as their targets may also prove to be alternative targets or provide new strategies for antimicrobials. In this article, we present an overview of the general mechanisms that bacteria use to regulate with RNA, focusing on examples from pathogens. In addition, we also briefly review how deep sequencing approaches have aided in opening new perspectives in small RNA identification and the study of their functions. Finally, we discuss examples of riboregulators in two model pathogens that control virulence factor expression or survival-associated phenotypes, such as stress tolerance, biofilm formation, or cell-cell communication, to illustrate how riboregulation factors into regulatory networks in bacterial pathogens.
细菌病原体在传播和感染过程中必须耐受或适应不同的环境和压力。调节 RNA(如小 RNA 和核糖开关)的转录后基因表达调控,现在被认为是许多细菌(包括病原体)适应的核心。对致病物种中基于 RNA 的调控(核糖调控)的研究提供了新的见解,了解这些细菌如何调节毒力基因表达。它还揭示了细菌小 RNA 通常如何全局控制基因表达的多种机制。核糖调控因子及其靶标也可能被证明是替代靶标或提供新的抗菌策略。在本文中,我们概述了细菌用于 RNA 调控的一般机制,重点介绍了病原体中的例子。此外,我们还简要回顾了深度测序方法如何帮助在小 RNA 鉴定及其功能研究方面开辟新视角。最后,我们讨论了两个模型病原体中核糖调控因子的例子,这些因子控制毒力因子表达或与生存相关的表型,如应激耐受、生物膜形成或细胞间通讯,以说明核糖调控因子如何融入细菌病原体的调控网络。