硫氧化迪耶拉菌ATSB10的全基因组序列，该菌是从韩国向日葵田分离出的一种硫代硫酸盐氧化细菌。
Complete Genome Sequence of Dyella thiooxydans ATSB10, a Thiosulfate-Oxidizing Bacterium Isolated from Sunflower Fields in South Korea.
作者信息
Hwangbo Kyeong, Um Yurry, Chung Hee, Yoo Jemin, Kim Ki Yoon, Madhaiyan Munusamy, Sa Tong Min, Lee Yi
机构信息
Department of Industrial Plant Science & Technology, Chungbuk National University, Cheongju, South Korea.
Department of Herbal Crop Research, National Institute of Horticultural and Herbal Science, Rural Development Administration, Eumseong, South Korea.
出版信息
Genome Announc. 2016 Jun 23;4(3):e00573-16. doi: 10.1128/genomeA.00573-16.
Abstract
Dyella thiooxydans ATSB10 (KACC 12756(T) = LMG 24673(T)) is a thiosulfate-oxidizing bacterium isolated from rhizosphere soils of sunflower plants. In this study, we completely sequenced the genome of D. thiooxydans ATSB10 and identified the genes involved in thiosulfate oxidation and the metabolism of aromatic intermediates.
摘要
硫氧化戴尔菌ATSB10（KACC 12756(T) = LMG 24673(T)）是一种从向日葵植物根际土壤中分离出的硫代硫酸盐氧化细菌。在本研究中，我们对硫氧化戴尔菌ATSB10的基因组进行了全测序，并鉴定了参与硫代硫酸盐氧化和芳香族中间体代谢的基因。
相似文献
1
Complete Genome Sequence of Dyella thiooxydans ATSB10, a Thiosulfate-Oxidizing Bacterium Isolated from Sunflower Fields in South Korea.
Genome Announc. 2016 Jun 23;4(3):e00573-16. doi: 10.1128/genomeA.00573-16.
2
Dyella thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soil of sunflower (Helianthus annuus L.).
Int J Syst Evol Microbiol. 2011 Feb;61(Pt 2):392-398. doi: 10.1099/ijs.0.022012-0. Epub 2010 Mar 19.
3
Complete genome sequence of Pandoraea thiooxydans DSM 25325(T), a thiosulfate-oxidizing bacterium.
J Biotechnol. 2016 Jan 10;217:51-2. doi: 10.1016/j.jbiotec.2015.11.009. Epub 2015 Nov 18.
4
Pandoraea thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soils of sesame (Sesamum indicum L.).
Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):21-26. doi: 10.1099/ijs.0.012823-0. Epub 2009 Jul 30.
5
Dyella kyungheensis sp. nov., isolated from soil of a cornus fruit field.
Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3807-3811. doi: 10.1099/ijs.0.051185-0. Epub 2013 May 10.
6
Draft Genome Sequence of Comamonas thiooxydans Strain S23T (DSM 17888T), a Thiosulfate-Oxidizing Bacterium Isolated from a Sulfur Spring in India.
Genome Announc. 2016 Aug 11;4(4):e00834-16. doi: 10.1128/genomeA.00834-16.
7
Mixotrophic metabolism in Burkholderia kururiensis subsp. thiooxydans subsp. nov., a facultative chemolithoautotrophic thiosulfate oxidizing bacterium isolated from rhizosphere soil and proposal for classification of the type strain of Burkholderia kururiensis as Burkholderia kururiensis subsp. kururiensis subsp. nov.
Arch Microbiol. 2009 Dec;191(12):885-94. doi: 10.1007/s00203-009-0517-4. Epub 2009 Oct 16.
8
Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea.
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):460-5. doi: 10.1099/ijs.0.64514-0.
9
Frateuria defendens sp. nov., bacterium isolated from the yellows grapevine's disease vector Hyalesthes obsoletus.
Int J Syst Evol Microbiol. 2019 May;69(5):1281-1287. doi: 10.1099/ijsem.0.003305. Epub 2019 Feb 20.
10
Chemolithoautotrophic oxidation of thiosulfate and phylogenetic distribution of sulfur oxidation gene (soxB) in rhizobacteria isolated from crop plants.
Res Microbiol. 2008 Nov-Dec;159(9-10):579-89. doi: 10.1016/j.resmic.2008.08.007. Epub 2008 Sep 12.
引用本文的文献
1
The genome sequence of Dyella jiangningensis FCAV SCS01 from a lignocellulose-decomposing microbial consortium metagenome reveals potential for biotechnological applications.
Genet Mol Biol. 2018;41(2):507-513. doi: 10.1590/1678-4685-GMB-2017-0155. Epub 2018 May 14.
本文引用的文献
1
Pfam: the protein families database.
Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27.
2
IMG: the Integrated Microbial Genomes database and comparative analysis system.
Nucleic Acids Res. 2012 Jan;40(Database issue):D115-22. doi: 10.1093/nar/gkr1044.
3
Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species.
Int J Syst Evol Microbiol. 2012 Mar;62(Pt 3):716-721. doi: 10.1099/ijs.0.038075-0. Epub 2011 Nov 25.
4
SEED: efficient clustering of next-generation sequences.
Bioinformatics. 2011 Sep 15;27(18):2502-9. doi: 10.1093/bioinformatics/btr447. Epub 2011 Aug 2.
5
Dyella thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soil of sunflower (Helianthus annuus L.).
Int J Syst Evol Microbiol. 2011 Feb;61(Pt 2):392-398. doi: 10.1099/ijs.0.022012-0. Epub 2010 Mar 19.
6
Mineral phosphate solubilization by rhizosphere bacteria and scope for manipulation of the direct oxidation pathway involving glucose dehydrogenase.
J Appl Microbiol. 2010 Jul;109(1):1-12. doi: 10.1111/j.1365-2672.2009.04654.x. Epub 2009 Dec 15.
7
The Pfam protein families database.
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17.
8
IMG ER: a system for microbial genome annotation expert review and curation.
Bioinformatics. 2009 Sep 1;25(17):2271-8. doi: 10.1093/bioinformatics/btp393. Epub 2009 Jun 27.
9
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
10
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
Zotero 插件