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确定结构的残基排序的简单方法。

Simple approach for ranking structure determining residues.

作者信息

Luna-Martínez Oscar D, Vidal-Limón Abraham, Villalba-Velázquez Miryam I, Sánchez-Alcalá Rosalba, Garduño-Juárez Ramón, Uversky Vladimir N, Becerril Baltazar

机构信息

Instituto de Biotecnología, Universidad Nacional Autónoma de México , Cuernavaca , Morelos , Mexico.

División de Biología Molecular, Instituto Potosino de Investigación Científica y Tecnológica , San Luis Potosí , Mexico.

出版信息

PeerJ. 2016 Jun 22;4:e2136. doi: 10.7717/peerj.2136. eCollection 2016.

Abstract

Mutating residues has been a common task in order to study structural properties of the protein of interest. Here, we propose and validate a simple method that allows the identification of structural determinants; i.e., residues essential for preservation of the stability of global structure, regardless of the protein topology. This method evaluates all of the residues in a 3D structure of a given globular protein by ranking them according to their connectivity and movement restrictions without topology constraints. Our results matched up with sequence-based predictors that look up for intrinsically disordered segments, suggesting that protein disorder can also be described with the proposed methodology.

摘要

为了研究目标蛋白质的结构特性,突变残基一直是一项常见的任务。在此,我们提出并验证了一种简单的方法,该方法能够识别结构决定因素,即无论蛋白质拓扑结构如何,对于维持整体结构稳定性至关重要的残基。此方法通过在无拓扑限制的情况下,根据给定球状蛋白质三维结构中所有残基的连接性和移动限制对它们进行排序来评估这些残基。我们的结果与寻找内在无序片段的基于序列的预测器相匹配,这表明蛋白质无序也可以用所提出的方法来描述。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dd4b/4924125/dc4839ded2bb/peerj-04-2136-g001.jpg

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