Duplat-Bermúdez L, Ruiz-Medrano R, Landsman D, Mariño-Ramírez L, Xoconostle-Cázares B
Departamento de Biotecnología y Bioingeniería; Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional. Av. IPN 2508 San Pedro Zacatenco, 07360 Mexico City, Mexico.
Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA.
Data Brief. 2016 Jun 8;8:520-8. doi: 10.1016/j.dib.2016.06.002. eCollection 2016 Sep.
In this dataset we integrated figures comparing leaf number and rosette diameter in three Arabidopsis FT overexpressor lines (AtFTOE) driven by KNAT1 promoter, "A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis" [5], vs Wild Type (WT) Arabidopsis plats. Also, presented in the tables are some transcriptomic data obtained by RNA-seq Illumina HiSeq from rosette leaves of Arabidopsis plants of AtFTOE 2.1 line vs WT with accession numbers SRR2094583 and SRR2094587 for AtFTOE replicates 1-3 and AtWT for control replicates 1-2 respectively. Raw data of paired-end sequences are located in the public repository of the National Center for Biotechnology Information of the National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA as Sequence Read Archive (SRA). Performed analyses of differential expression genes are visualized by Mapman and presented in figures. "Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering" [2], described the interpretation and discussion of the obtained data.
在该数据集中，我们整合了一些图表，用于比较由KNAT1启动子驱动的三个拟南芥FT过表达系（AtFTOE）（“由拟南芥STM基因编码的同源域蛋白KNOTTED类的一个成员”[5]）与野生型（WT）拟南芥植株的叶片数量和莲座直径。此外，表格中还呈现了一些转录组数据，这些数据是通过RNA-seq Illumina HiSeq从AtFTOE 2.1系拟南芥植株的莲座叶中获得的，与WT相比，AtFTOE重复1-3的登录号为SRR2094583和SRR2094587，对照重复1-2的登录号为AtWT。双端序列的原始数据位于美国国立医学图书馆、美国国立卫生研究院国家生物技术信息中心的公共储存库中，作为序列读取存档（SRA）。通过Mapman对差异表达基因进行分析，并在图中呈现。“由诱导早花的分生组织特异性启动子驱动的拟南芥开花位点T过表达的转录组分析”[2]描述了对所得数据的解释和讨论。
