Ulyanova Vera, Shah Mahmud Raihan, Dudkina Elena, Vershinina Valentina, Domann Eugen, Ilinskaya Olga
Institute of Fundamental Medicine and Biology, Kazan Federal University.
J Gen Appl Microbiol. 2016 Sep 12;62(4):181-8. doi: 10.2323/jgam.2016.02.005. Epub 2016 Jul 4.
The potential of microbial ribonucleases as promising antitumor and antiviral agents, determines today's directions of their study. One direction is connected with biodiversity of RNases. We have analyzed completed and drafted Bacillus genomes deposited in GenBank for the presence of coding regions similar to the gene of an extracellular guanyl-preferring RNase of Bacillus amyloliquefaciens (barnase). Orthologues of the barnase gene were detected in 9 species out of 83. All of these belong to "B. subtilis" group within the genus. B. subtilis itself, as well as some other species within this group, lack such types of RNases. RNases similar to barnase were also found in species of "B. cereus" group as a part of plasmid-encoded S-layer toxins. It was also found that taxonomic states of culture collection strains, which were initially described based on a limited set of phenotypic characteristics, can be misleading and need to be confirmed. Using several approaches such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), sequencing of genes for 16S ribosomal RNA and RNA polymerase subunit beta followed by reconstruction of phylogenetic trees, we have re-identified two RNase-secreting Bacillus strains: B. thuringiensis B-388 which should be assigned as B. altitudinis B388 and B. intermedius 7P which should be renamed as B. pumilus 7P. Therefore, small secreted guanyl-preferring RNases are the feature of "B. subtilis" group only, which is characterized by distinctive lifestyle and adaptation strategies to environment.
微生物核糖核酸酶作为有前景的抗肿瘤和抗病毒药物的潜力,决定了当今对其研究的方向。一个方向与核糖核酸酶的生物多样性有关。我们分析了GenBank中已完成和正在起草的芽孢杆菌基因组,以寻找与解淀粉芽孢杆菌细胞外鸟嘌呤偏好性核糖核酸酶(barnase)基因相似的编码区。在83个物种中的9个物种中检测到了barnase基因的直系同源物。所有这些都属于该属内的“枯草芽孢杆菌”组。枯草芽孢杆菌本身以及该组内的其他一些物种缺乏此类核糖核酸酶。在“蜡样芽孢杆菌”组的物种中也发现了与barnase相似的核糖核酸酶,它们是质粒编码的S层毒素的一部分。还发现,最初基于有限的一组表型特征描述的培养物保藏菌株的分类状态可能会产生误导,需要加以确认。通过使用多种方法,如基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)、16S核糖体RNA和RNA聚合酶β亚基基因测序,随后重建系统发育树,我们重新鉴定了两株分泌核糖核酸酶的芽孢杆菌菌株:苏云金芽孢杆菌B-388应重新归类为高海拔芽孢杆菌B388,中间芽孢杆菌7P应重新命名为短小芽孢杆菌7P。因此,小的分泌型鸟嘌呤偏好性核糖核酸酶仅是“枯草芽孢杆菌”组的特征,该组具有独特的生活方式和对环境的适应策略。