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利用一种生成势能面的有效方法对芬纳-马修斯-奥尔森复合物中色素的位点能量及其波动进行定量评估。

Quantitative Evaluation of Site Energies and Their Fluctuations of Pigments in the Fenna-Matthews-Olson Complex with an Efficient Method for Generating a Potential Energy Surface.

作者信息

Higashi Masahiro, Saito Shinji

机构信息

Department of Chemistry, Biology and Marine Science, University of the Ryukyus , 1 Senbaru, Nishihara, Okinawa 903-0213, Japan.

Department of Theoretical and Computational Molecular Science, Institute for Molecular Science , 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan.

出版信息

J Chem Theory Comput. 2016 Aug 9;12(8):4128-37. doi: 10.1021/acs.jctc.6b00516. Epub 2016 Jul 14.

Abstract

We develop an efficient method to generate an accurate semiglobal potential energy surface of a molecule in condensed phases with low computational cost. We apply the method to the calculation of the site energies and their fluctuations of bacteriochlorophyll (BChl) a pigments in the Fenna-Matthews-Olson (FMO) complex using the density functional properly describing the ground and excited states of BChl a in solutions in our previous work (J. Phys. Chem. B 2014, 118, 10906-10918). The errors of the potential energies calculated from the present and QM/MM methods are small: ∼1 kcal/mol for both the ground and excited states. The calculated site energies are in good agreement with the experimentally fitted results. The calculated spectral density also agrees with the experimentally available data. The spectral densities of BChl 2 and BChl 5 are much larger than those of the other five sites. The present method is expected to provide new insights into the efficient excitation energy transfer in light-harvesting antennas.

摘要

我们开发了一种高效的方法,能够以较低的计算成本生成凝聚相中分子的精确半全局势能面。我们运用该方法,利用在我们之前的工作(《物理化学杂志B》2014年,第118卷,10906 - 10918页)中恰当描述溶液中细菌叶绿素(BChl)a基态和激发态的密度泛函,来计算费纳 - 马修斯 - 奥尔森(FMO)复合物中BChl a色素的位点能量及其涨落。通过本方法和量子力学/分子力学(QM/MM)方法计算得到的势能误差很小:基态和激发态的误差均约为1千卡/摩尔。计算得到的位点能量与实验拟合结果高度吻合。计算得到的光谱密度也与实验可得数据相符。BChl 2和BChl 5的光谱密度比其他五个位点的光谱密度大得多。预计本方法将为光捕获天线中高效的激发能量转移提供新的见解。

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