生物网络生成器2.2：基于规则建模的进展
BioNetGen 2.2: advances in rule-based modeling.
作者信息
Harris Leonard A, Hogg Justin S, Tapia José-Juan, Sekar John A P, Gupta Sanjana, Korsunsky Ilya, Arora Arshi, Barua Dipak, Sheehan Robert P, Faeder James R
机构信息
Department of Computational and Systems Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
出版信息
Bioinformatics. 2016 Nov 1;32(21):3366-3368. doi: 10.1093/bioinformatics/btw469. Epub 2016 Jul 8.
Abstract
UNLABELLED
: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.
AVAILABILITY AND IMPLEMENTATION
Stable BioNetGen releases (Linux, Mac OS/X and Windows), with documentation, are available at http://bionetgen.org Source code is available at http://github.com/RuleWorld/bionetgen CONTACT: bionetgen.help@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.
摘要
未标注
BioNetGen是一个用于复杂生化系统基于规则建模的开源软件包。该软件的2.2版本在模型规范和模拟方面引入了众多新特性。在此，我们报告这些新增功能，讨论它们如何促进构建、模拟和分析比以往更大、更复杂的模型。
可用性与实现
可在http://bionetgen.org获取带有文档的稳定BioNetGen版本（适用于Linux、Mac OS/X和Windows）。源代码可在http://github.com/RuleWorld/bionetgen获取。联系方式：bionetgen.help@gmail.com。补充信息：补充数据可在《生物信息学》在线获取。
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