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从地层水和原油混合物中分离出的森氏肠杆菌5-4菌株的高质量基因组序列及描述。

High quality genome sequence and description of Enterobacter mori strain 5-4, isolated from a mixture of formation water and crude-oil.

作者信息

Zhang Fan, Su Sanbao, Yu Gaoming, Zheng Beiwen, Shu Fuchang, Wang Zhengliang, Xiang Tingsheng, Dong Hao, Zhang Zhongzhi, Hou DuJie, She Yuehui

机构信息

The Key Laboratory of Marine Reservoir Evolution and Hydrocarbon Accumulation Mechanism, School of Energy Resources, China University of Geosciences, Beijing, China.

College of Chemistry and Environmental Engineering, Yangtze University, Jingzhou, China.

出版信息

Stand Genomic Sci. 2015 Feb 27;10:9. doi: 10.1186/1944-3277-10-9. eCollection 2015.

DOI:10.1186/1944-3277-10-9
PMID:27408680
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4940761/
Abstract

Enterobacter mori strain 5-4 is a Gram-negative, motile, rod shaped, and facultatively anaerobic bacterium, which was isolated from a mixture of formation water (also known as oil-reservior water) and crude-oil in Karamay oilfield, China. To date, there is only one E. mori genome has been sequenced and very little knowledge about the mechanism of E. mori adapted to the petroleum reservoir. Here, we report the second E. mori genome sequence and annotation, together with the description of features for this organism. The 4,621,281 bp assembly genome exhibits a G + C content of 56.24% and contains 4,317 protein-coding and 65 RNA genes, including 5 rRNA genes.

摘要

桑氏肠杆菌菌株5-4是一种革兰氏阴性、具运动性、杆状的兼性厌氧菌,它是从中国克拉玛依油田的地层水(也称为油藏水)和原油的混合物中分离出来的。迄今为止,仅对一株桑氏肠杆菌的基因组进行了测序,对于桑氏肠杆菌适应油藏的机制了解甚少。在此,我们报告了桑氏肠杆菌的第二个基因组序列及注释,并对该生物体的特征进行了描述。该组装基因组大小为4,621,281 bp,G + C含量为56.24%,包含4,317个蛋白质编码基因和65个RNA基因,其中包括5个rRNA基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/186a15ba0231/40793_2014_38_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/289baf48724e/40793_2014_38_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/ccb3fe56c698/40793_2014_38_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/186a15ba0231/40793_2014_38_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/289baf48724e/40793_2014_38_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/ccb3fe56c698/40793_2014_38_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6da0/4940761/186a15ba0231/40793_2014_38_Fig3_HTML.jpg

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