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芽孢杆菌属A2菌株的基因组序列草图

Draft genome sequence of Paenibacillus sp. strain A2.

作者信息

Zheng Beiwen, Zhang Fan, Dong Hao, Chai Lujun, Shu Fuchang, Yi Shaojin, Wang Zhengliang, Cui Qingfeng, Dong Hanping, Zhang Zhongzhi, Hou Dujie, Yang Jinshui, She Yuehui

机构信息

State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.

Key Laboratory of Marine Reservoir Evolution and Hydrocarbon Accumulation Mechanism, School of Energy Resources, China University of Geosciences, Beijing, China.

出版信息

Stand Genomic Sci. 2016 Jan 26;11:9. doi: 10.1186/s40793-015-0125-7. eCollection 2016.

Abstract

Paenibacillus sp. strain A2 is a Gram-negative rod-shaped bacterium isolated from a mixture of formation water and petroleum in Daqing oilfield, China. This facultative aerobic bacterium was found to have a broad capacity for metabolizing hydrocarbon and organosulfur compounds, which are the main reasons for the interest in sequencing its genome. Here we describe the features of Paenibacillus sp. strain A2, together with the genome sequence and its annotation. The 7,650,246 bp long genome (1 chromosome but no plasmid) exhibits a G+C content of 54.2 % and contains 7575 protein-coding and 49 RNA genes, including 3 rRNA genes. One putative alkane monooxygenase, one putative alkanesulfonate monooxygenase, one putative alkanesulfonate transporter and four putative sulfate transporters were found in the draft genome.

摘要

芽孢杆菌属菌株A2是从中国大庆油田的地层水和石油混合物中分离出的革兰氏阴性杆状细菌。这种兼性需氧细菌被发现具有广泛的代谢碳氢化合物和有机硫化合物的能力,这也是对其基因组进行测序感兴趣的主要原因。在此,我们描述了芽孢杆菌属菌株A2的特征,以及其基因组序列和注释。该基因组长度为7,650,246 bp(1条染色体,无质粒),G+C含量为54.2%,包含7575个蛋白质编码基因和49个RNA基因,其中包括3个rRNA基因。在该草图基因组中发现了一个假定的烷烃单加氧酶、一个假定的链烷磺酸盐单加氧酶、一个假定的链烷磺酸盐转运蛋白和四个假定的硫酸盐转运蛋白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/633a/4728784/cf9a8e2492d2/40793_2015_125_Fig1_HTML.jpg

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