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利用DiversiLab重复聚合酶链反应分析变形链球菌的遗传多样性及传播证据

Genetic Diversity and Evidence for Transmission of Streptococcus mutans by DiversiLab rep-PCR.

作者信息

Momeni Stephanie S, Whiddon Jennifer, Cheon Kyounga, Ghazal Tariq, Moser Stephen A, Childers Noel K

机构信息

Department of Pediatric Dentistry, The University of Alabama at Birmingham, The School of Dentistry Building Room 304, 1720 2nd Avenue South, Birmingham, AL 35294-0007, USA.

Department of Pathology, The University of Alabama at Birmingham, West Pavilion Room, 1720 2nd Avenue South, Birmingham, AL 35294-0007, USA.

出版信息

J Microbiol Methods. 2016 Sep;128:108-117. doi: 10.1016/j.mimet.2016.07.010. Epub 2016 Jul 16.

Abstract

This two-part study investigated the genetic diversity and transmission of Streptococcus mutans using the DiversiLab repetitive extragenic palindromic PCR (rep-PCR) approach. For children with S. mutans and participating household members, analysis for evidence of unrelated child-to-child as well as intra-familial transmission was evaluated based on commonality of genotypes. A total of 169 index children and 425 household family members from Uniontown, Alabama were evaluated for genetic diversity using rep-PCR. Thirty-four unique rep-PCR genotypes were observed for 13,906 S. mutans isolates. For transmission, 117 child and household isolates were evaluated for shared genotype (by child and by genotype cases, multiple matches possible for each child). Overall, children had 1-9 genotypes and those with multiple genotypes were 2.3 times more likely to have caries experience (decayed, missing and filled teeth/surfaces>0). Only 28% of children shared all genotypes within the household, while 72% had at least 1 genotype not shared with anyone in the household. Children had genotype(s) not shared with any household members in 157 cases. In 158 cases children and household members shared a genotype in which 55% (87/158 cases) were shared with more than one family member. Children most frequently shared genotypes with their mothers (54%; 85/158), siblings (46%; 72/158) and cousins (23%; 37/158). A reference library for S. mutans for epidemiological surveillance using the DiversiLab rep-PCR approach is detailed. The genetic diversity of S. mutans in this population demonstrated frequent commonality of genotypes. Evidence for both child-to-child and intra-familial transmission of S. mutans was observed by rep-PCR.

摘要

这项分为两部分的研究采用DiversiLab重复外显子回文PCR(rep-PCR)方法,调查了变形链球菌的遗传多样性和传播情况。对于携带变形链球菌的儿童及其参与研究的家庭成员,基于基因型的共性,评估了非亲属儿童之间以及家庭内部传播的证据。使用rep-PCR对来自阿拉巴马州尤宁敦的169名索引儿童和425名家庭成员进行了遗传多样性评估。对13906株变形链球菌分离株观察到34种独特的rep-PCR基因型。对于传播情况,对117株儿童和家庭分离株进行了共享基因型评估(按儿童和基因型病例,每个儿童可能有多个匹配)。总体而言,儿童有1至9种基因型,有多种基因型的儿童患龋经历(龋失补牙数/牙面数>0)的可能性高2.3倍。只有28%的儿童在家庭中共享所有基因型,而72%的儿童至少有一种基因型未与家庭中的任何人共享。在157例中,儿童有未与任何家庭成员共享的基因型。在158例中,儿童和家庭成员共享一种基因型,其中55%(87/158例)与不止一名家庭成员共享。儿童最常与母亲(54%;85/158)、兄弟姐妹(46%;72/158)和表亲(23%;37/158)共享基因型。详细介绍了使用DiversiLab rep-PCR方法进行变形链球菌流行病学监测的参考文库。该人群中变形链球菌的遗传多样性显示出基因型的频繁共性。通过rep-PCR观察到了变形链球菌在儿童之间和家庭内部传播的证据。

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