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利用变构 DNA 四面体型纳米结构对 DNA 杂交进行动态调控。

Dynamic Modulation of DNA Hybridization Using Allosteric DNA Tetrahedral Nanostructures.

机构信息

Division of Physical Biology and Bioimaging Center, Shanghai Synchrotron Radiation Facility, Shanghai Institute of Applied Physics, Chinese Academy of Sciences , Shanghai 201800, China.

School of Chemistry and Molecular Engineering, East China Normal University , Shanghai 200241, China.

出版信息

Anal Chem. 2016 Aug 16;88(16):8043-9. doi: 10.1021/acs.analchem.6b01373. Epub 2016 Jul 28.

Abstract

The fixed dynamic range of traditional biosensors limits their utility in several real applications. For example, viral load monitoring requires the dynamic range spans several orders of magnitude; whereas, monitoring of drugs requires extremely narrow dynamic range. To overcome this limitation, here, we devised tunable biosensing interface using allosteric DNA tetrahedral bioprobes to tune the dynamic range of DNA biosensors. Our strategy takes the advantage of the readily and flexible structure design and predictable geometric reconfiguration of DNA nanotechnology. We reconfigured the DNA tetrahedral bioprobes by inserting the effector sequence into the DNA tetrahedron, through which, the binding affinity of DNA tetrahedral bioprobes can be tuned. As a result, the detection limit of DNA biosensors can be programmably regulated. The dynamic range of DNA biosensors can be tuned (narrowed or extended) for up to 100-fold. Using the regulation of binding affinity, we realized the capture and release of biomolecules by tuning the binding behavior of DNA tetrahedral bioprobes.

摘要

传统生物传感器的固定动态范围限制了它们在几个实际应用中的实用性。例如,病毒载量监测需要动态范围跨越几个数量级;而药物监测则需要极其狭窄的动态范围。为了克服这一限制,在这里,我们设计了一种使用变构 DNA 四面体形生物探针的可调谐生物传感界面,以调节 DNA 生物传感器的动态范围。我们的策略利用了 DNA 纳米技术易于和灵活的结构设计以及可预测的几何重配置。我们通过将效应物序列插入 DNA 四面体来重新配置 DNA 四面体形生物探针,通过这种方式,可以调节 DNA 四面体形生物探针的结合亲和力。结果,DNA 生物传感器的检测限可以被可编程地调节。DNA 生物传感器的动态范围可以被调节(变窄或变宽)多达 100 倍。通过调节结合亲和力,我们实现了通过调节 DNA 四面体形生物探针的结合行为来捕获和释放生物分子。

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