Hollingsworth Scott A, Batabyal Dipanwita, Nguyen Brian D, Poulos Thomas L
Department of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697.
Department of Molecular Biology and Biochemistry, University of California, Irvine, CA 92697; Department of Pharmaceutical Sciences, University of California, Irvine, CA 92697; Department of Chemistry, University of California, Irvine, CA 92697
Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8723-8. doi: 10.1073/pnas.1606474113. Epub 2016 Jul 20.
The heme iron of cytochromes P450 must be reduced to bind and activate molecular oxygen for substrate oxidation. Reducing equivalents are derived from a redox partner, which requires the formation of a protein-protein complex. A subject of increasing discussion is the role that redox partner binding plays, if any, in favoring significant structural changes in the P450s that are required for activity. Many P450s now have been shown to experience large open and closed motions. Several structural and spectral studies indicate that the well-studied P450cam adopts the open conformation when its redox partner, putidaredoxin (Pdx), binds, whereas recent NMR studies indicate that this view is incorrect. Given the relevance of this discrepancy to P450 chemistry, it is important to determine whether Pdx favors the open or closed form of P450cam. Here, we have used both computational and experimental isothermal titration calorimetry studies that unequivocally show Pdx favors binding to the open form of P450cam. Analyses of molecular-dynamic trajectories also provide insights into intermediate conformational states that could be relevant to catalysis.
细胞色素P450的血红素铁必须被还原,以结合并激活分子氧用于底物氧化。还原当量来自于一个氧化还原伙伴,这需要形成一个蛋白质-蛋白质复合物。一个越来越受讨论的话题是氧化还原伙伴结合在促进P450活性所需的显著结构变化中所起的作用(如果有作用的话)。现在已经表明,许多P450会经历大幅度的开合运动。一些结构和光谱研究表明,经过充分研究的P450cam在其氧化还原伙伴——恶臭假单胞菌铁氧还蛋白(Pdx)结合时会采取开放构象,而最近的核磁共振研究表明这种观点是不正确的。鉴于这种差异与P450化学的相关性,确定Pdx有利于P450cam的开放形式还是封闭形式很重要。在这里,我们使用了计算和实验等温滴定量热法研究,明确表明Pdx有利于与P450cam的开放形式结合。分子动力学轨迹分析也为可能与催化相关的中间构象状态提供了见解。