单核细胞增生李斯特菌菌株HPB2088（血清型1/2a）的基因组序列，该菌株于1994年在加拿大采集，为环境分离株。
Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994.
作者信息
Pightling Arthur W, Rand Hugh, Strain Errol, Pagotto Franco
机构信息
Listeriosis Reference Centre Microbiology Research Division, Bureau of Microbial Hazards, Food Directorate, Health Canada, Ottawa, Ontario, Canada.
Biostatistics and Bioinformatics Branch, Office of Analytics and Outreach, Center for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, Maryland, USA.
出版信息
Genome Announc. 2016 Aug 4;4(4):e00760-16. doi: 10.1128/genomeA.00760-16.
Abstract
Listeria monocytogenes is a foodborne pathogen that causes severe illness. Thus, ongoing efforts at real-time whole-genome sequencing are of utmost importance. However, it is also important that retrospective analyses that place these data into context be performed. Here, we present the genome sequence of strain HPB2088, which was collected in 1994.
摘要
单核细胞增生李斯特菌是一种可导致严重疾病的食源性病原体。因此，持续进行实时全基因组测序至关重要。然而，开展将这些数据置于背景中的回顾性分析也同样重要。在此，我们展示了1994年收集的HPB2088菌株的基因组序列。
相似文献
1
Genome Sequence of Listeria monocytogenes Strain HPB2088 (Serotype 1/2a), an Environmental Isolate Collected in Canada in 1994.单核细胞增生李斯特菌菌株HPB2088（血清型1/2a）的基因组序列，该菌株于1994年在加拿大采集，为环境分离株。
Genome Announc. 2016 Aug 4;4(4):e00760-16. doi: 10.1128/genomeA.00760-16.
2
Genome Sequence of the Listeria monocytogenes Food Isolate HPB913, Collected in Canada in 1993.1993年于加拿大采集的单核细胞增生李斯特菌食品分离株HPB913的基因组序列
Genome Announc. 2016 Sep 15;4(5):e00911-16. doi: 10.1128/genomeA.00911-16.
3
Genome Sequence of Strain F4244, a 4b Serotype.4b血清型F4244菌株的基因组序列
Genome Announc. 2017 Dec 7;5(49):e01324-17. doi: 10.1128/genomeA.01324-17.
4
Whole-genome sequencing identification of a multidrug-resistant Listeria monocytogenes serotype 1/2a isolated from fresh mixed sausage in southern Brazil.巴西南部新鲜混合香肠中分离的一株产单核细胞李斯特菌 1/2a 型耐药谱全基因组序列分析
Infect Genet Evol. 2018 Nov;65:127-130. doi: 10.1016/j.meegid.2018.07.028. Epub 2018 Jul 24.
5
Identification and characterization of nucleotide sequence differences in three virulence-associated genes of listeria monocytogenes strains representing clinically important serotypes.对代表临床上重要血清型的单核细胞增生李斯特菌菌株的三个毒力相关基因中的核苷酸序列差异进行鉴定和表征。
Curr Microbiol. 1998 May;36(5):309-18. doi: 10.1007/s002849900315.
6
Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept.使用全基因组测序作为食品安全管理工具对肉类加工厂中的单核细胞增生李斯特菌进行追踪：概念验证。
Int J Food Microbiol. 2017 Sep 18;257:157-164. doi: 10.1016/j.ijfoodmicro.2017.06.015. Epub 2017 Jun 20.
7
The Arsenic Resistance-Associated Listeria Genomic Island LGI2 Exhibits Sequence and Integration Site Diversity and a Propensity for Three Listeria monocytogenes Clones with Enhanced Virulence.与砷抗性相关的李斯特菌基因组岛LGI2表现出序列和整合位点多样性，以及在三个毒力增强的单核细胞增生李斯特菌克隆中的倾向性。
Appl Environ Microbiol. 2017 Oct 17;83(21). doi: 10.1128/AEM.01189-17. Print 2017 Nov 1.
8
Complete Genome Sequence of Listeria monocytogenes Strain DPC6895, a Serotype 1/2b Isolate from Bovine Raw Milk.单核细胞增生李斯特菌菌株DPC6895的全基因组序列，该菌株是从牛生鲜乳中分离出的血清型1/2b菌株。
Genome Announc. 2015 Jun 11;3(3):e00629-15. doi: 10.1128/genomeA.00629-15.
9
Complete Genome Sequences of 12 Isolates of Belonging to Serotypes 1/2a, 1/2b, and 4b Obtained from Food Products and Food-Processing Environments in Canada.从加拿大食品及食品加工环境中分离得到的12株血清型1/2a、1/2b和4b的完整基因组序列
Genome Announc. 2017 May 11;5(19):e00258-17. doi: 10.1128/genomeA.00258-17.
10
Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream.利用拟宏基因组学方法追踪来源于污染冰淇淋的单增李斯特菌。
BMC Infect Dis. 2020 Jan 29;20(1):83. doi: 10.1186/s12879-019-4747-z.
本文引用的文献
1
Tolerance of Listeria monocytogenes to Quaternary Ammonium Sanitizers Is Mediated by a Novel Efflux Pump Encoded by emrE.单核细胞增生李斯特菌对季铵消毒剂的耐受性由emrE编码的新型外排泵介导。
Appl Environ Microbiol. 2015 Nov 20;82(3):939-53. doi: 10.1128/AEM.03741-15. Print 2016 Feb 1.
2
The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data.单核细胞增生李斯特菌核心基因组序列分型工具（LmCGST）：一种利用下一代测序数据进行分子特征分析的生物信息学流程。
BMC Microbiol. 2015 Oct 22;15:224. doi: 10.1186/s12866-015-0526-1.
3
BayesHammer: Bayesian clustering for error correction in single-cell sequencing.BayesHammer：单细胞测序中用于纠错的贝叶斯聚类。
BMC Genomics. 2013;14 Suppl 1(Suppl 1):S7. doi: 10.1186/1471-2164-14-S1-S7. Epub 2013 Jan 21.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak.高通量基因组测序在一次大规模食源性暴发期间对两株李斯特菌临床分离株的研究。
BMC Genomics. 2010 Feb 18;11:120. doi: 10.1186/1471-2164-11-120.
6
Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.迈向用于（宏）基因组注释的标准操作程序（SOP）在线存储库。
OMICS. 2008 Jun;12(2):137-41. doi: 10.1089/omi.2008.0017.
7
Listeria monocytogenes: a foodborne pathogen.单核细胞增生李斯特菌：一种食源性病原体。
CMAJ. 1988 Mar 1;138(5):413-8.
8
Listeria monocytogenes, a food-borne pathogen.单核细胞增生李斯特菌，一种食源性病原体。
Microbiol Rev. 1991 Sep;55(3):476-511. doi: 10.1128/mr.55.3.476-511.1991.
Zotero 插件