链霉菌属F-3菌株的基因组序列草图
Draft Genome Sequence of Streptomyces sp. F-3.
作者信息
Sun Xiaomeng, Meng Jing, Liu Shijia, Zhang Huaiqiang, Wang Lushan
机构信息
The State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong, China.
Jinan Maternity and Child Care Hospital, Jinan, Shandong, China.
出版信息
Genome Announc. 2016 Aug 4;4(4):e00780-16. doi: 10.1128/genomeA.00780-16.
Abstract
Streptomyces sp. F-3 is a kind of thermophilic Streptomyces strain that can produce cellulolytic enzymes and diverse secondary metabolites. Here, we report the complete genome of this organism, whose genome length is 5,303,958 bp, containing 6,041 protein-coding genes, 69 tRNA operons, and three rRNA operons.
摘要
链霉菌属F-3是一种嗜热链霉菌菌株，能够产生纤维素分解酶和多种次级代谢产物。在此，我们报道了该菌株的完整基因组，其基因组长度为5,303,958碱基对，包含6,041个蛋白质编码基因、69个tRNA操纵子和3个rRNA操纵子。
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本文引用的文献
1
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
2
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.
ISME J. 2012 Aug;6(8):1621-4. doi: 10.1038/ismej.2012.8. Epub 2012 Mar 8.
3
Microbial dynamics and enzyme activities during rapid composting of municipal solid waste - a compost maturity analysis perspective.
Bioresour Technol. 2008 Sep;99(14):6512-9. doi: 10.1016/j.biortech.2007.11.030. Epub 2007 Dec 26.
4
Multimodular biocatalysts for natural product assembly.
Naturwissenschaften. 2001 Mar;88(3):93-101. doi: 10.1007/s001140100211.
5
Primary metabolism and its control in streptomycetes: a most unusual group of bacteria.
Adv Microb Physiol. 2000;42:47-238. doi: 10.1016/s0065-2911(00)42003-5.
6
Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico.
Microbiology (Reading). 1999 Sep;145 ( Pt 9):2183-2202. doi: 10.1099/00221287-145-9-2183.
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