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链霉菌属F-3菌株的基因组序列草图

Draft Genome Sequence of Streptomyces sp. F-3.

作者信息

Sun Xiaomeng, Meng Jing, Liu Shijia, Zhang Huaiqiang, Wang Lushan

机构信息

The State Key Laboratory of Microbial Technology, Shandong University, Jinan, Shandong, China.

Jinan Maternity and Child Care Hospital, Jinan, Shandong, China.

出版信息

Genome Announc. 2016 Aug 4;4(4):e00780-16. doi: 10.1128/genomeA.00780-16.

DOI:10.1128/genomeA.00780-16
PMID:27492002
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4974323/
Abstract

Streptomyces sp. F-3 is a kind of thermophilic Streptomyces strain that can produce cellulolytic enzymes and diverse secondary metabolites. Here, we report the complete genome of this organism, whose genome length is 5,303,958 bp, containing 6,041 protein-coding genes, 69 tRNA operons, and three rRNA operons.

摘要

链霉菌属F-3是一种嗜热链霉菌菌株，能够产生纤维素分解酶和多种次级代谢产物。在此，我们报道了该菌株的完整基因组，其基因组长度为5,303,958碱基对，包含6,041个蛋白质编码基因、69个tRNA操纵子和3个rRNA操纵子。

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.SOAPdenovo2：一种经验丰富的、内存效率高的短读长从头组装器。
Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18.
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Primary metabolism and its control in streptomycetes: a most unusual group of bacteria.链霉菌中的初级代谢及其调控：一类非常特殊的细菌。
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Forty years of genetics with Streptomyces: from in vivo through in vitro to in silico.链霉菌遗传学四十年：从体内研究到体外研究再到计算机模拟研究
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