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运用多元交叉相关性、格兰杰因果关系和图形模型来量化害虫种群之间的时空同步性和因果关系。

Using multivariate cross correlations, Granger causality and graphical models to quantify spatiotemporal synchronization and causality between pest populations.

作者信息

Damos Petros

机构信息

Department of Environmental Conservation and Management, Faculty of Pure and Applied Sciences, Open University of Cyprus, Main OUC building: 33, Giannou Kranidioti Ave., Latsia, 2220, Nicosia, Cyprus.

WebScience, Mathematics Department, Faculty of Sciences, Aristotle University of Thessaloniki, University Campus, 59100, Thessaloniki, Greece.

出版信息

BMC Ecol. 2016 Aug 5;16:33. doi: 10.1186/s12898-016-0087-7.

Abstract

BACKGROUND

This work combines multivariate time series analysis and graph theory to detect synchronization and causality among certain ecological variables and to represent significant correlations via network projections. Four different statistical tools (cross-correlations, partial cross-correlations, Granger causality and partial Granger causality) utilized to quantify correlation strength and causality among biological entities. These indices correspond to different ways to estimate the relationships between different variables and to construct ecological networks using the variables as nodes and the indices as edges. Specifically, correlations and Granger causality indices introduce rules that define the associations (links) between the ecological variables (nodes). This approach is used for the first time to analyze time series of moth populations as well as temperature and relative humidity in order to detect spatiotemporal synchronization over an agricultural study area and to illustrate significant correlations and causality interactions via graphical models.

RESULTS

The networks resulting from the different approaches are trimmed and show how the network configurations are affected by each construction technique. The Granger statistical rules provide a simple test to determine whether one series (population) is caused by another series (i.e. environmental variable or other population) even when they are not correlated. In most cases, the statistical analysis and the related graphical models, revealed intra-specific links, a fact that may be linked to similarities in pest population life cycles and synchronizations. Graph theoretic landscape projections reveal that significant associations in the populations are not subject to landscape characteristics. Populations may be linked over great distances through physical features such as rivers and not only at adjacent locations in which significant interactions are more likely to appear. In some cases, incidental connections, with no ecological explanation, were also observed; however, this was expected because some of the statistical methods used to define non trivial associations show connections that cannot be interpreted phenomenologically.

CONCLUSIONS

Incorporating multivariate causal interactions in a probabilistic sense comes closer to reality than doing per se binary theoretic constructs because the former conceptually incorporate the dynamics of all kinds of ecological variables within the network. The advantage of Granger rules over correlations is that Granger rules have dynamic features and provide an easy way to examine the dynamic causal relations of multiple time-series variables. The constructed networks may provide an intuitive, advantageous representation of multiple populations' associations that can be realized within an agro-ecosystem. These relationships may be due to life cycle synchronizations, exposure to a shared climate or even more complicated ecological interactions such as moving behavior, dispersal patterns and host allocation. Moreover, they are useful for drawing inferences regarding pest population dynamics and their spatial management. Extending these models by including more variables should allow the exploration of intra and interspecies relationships in larger ecological systems, and the identification of specific population traits that might constrain their structures in larger areas.

摘要

背景

本研究结合多元时间序列分析和图论,以检测特定生态变量之间的同步性和因果关系,并通过网络投影来表示显著的相关性。使用了四种不同的统计工具(交叉相关性、偏交叉相关性、格兰杰因果关系和偏格兰杰因果关系)来量化生物实体之间的相关强度和因果关系。这些指标对应于估计不同变量之间关系以及以变量为节点、指标为边构建生态网络的不同方法。具体而言,相关性和格兰杰因果关系指标引入了定义生态变量(节点)之间关联(链接)的规则。该方法首次用于分析蛾类种群以及温度和相对湿度的时间序列,以检测农业研究区域内的时空同步性,并通过图形模型说明显著的相关性和因果相互作用。

结果

不同方法得到的网络经过了修剪,并展示了每种构建技术如何影响网络配置。格兰杰统计规则提供了一个简单的检验方法,用于确定一个序列(种群)是否由另一个序列(即环境变量或其他种群)引起,即使它们之间没有相关性。在大多数情况下,统计分析和相关的图形模型揭示了种内联系,这一事实可能与害虫种群生命周期和同步性的相似性有关。图论景观投影表明,种群中的显著关联不受景观特征的影响。种群可能通过河流等物理特征在远距离建立联系,而不仅仅是在更可能出现显著相互作用的相邻位置。在某些情况下,还观察到了没有生态解释的偶然联系;然而,这是可以预料的,因为用于定义非平凡关联的一些统计方法显示出无法从现象学角度解释的联系。

结论

从概率意义上纳入多元因果相互作用比单纯进行二元理论构建更接近现实,因为前者在概念上纳入了网络中各种生态变量的动态变化。格兰杰规则相对于相关性的优势在于,格兰杰规则具有动态特征,并提供了一种简便的方法来检验多个时间序列变量的动态因果关系。构建的网络可以直观、有利地表示农业生态系统中多个种群的关联。这些关系可能是由于生命周期同步、共同暴露于某种气候,甚至是更复杂的生态相互作用,如移动行为、扩散模式和寄主分配。此外,它们有助于推断害虫种群动态及其空间管理。通过纳入更多变量来扩展这些模型,应该能够探索更大生态系统中的种内和种间关系,并识别可能在更大区域限制其结构的特定种群特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a6b/4974811/970d6b9967bf/12898_2016_87_Fig2_HTML.jpg

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