Kämpfer Peter, Irgang Rute, Busse Hans-Jürgen, Poblete-Morales Mathías, Kleinhagauer Tanita, Glaeser Stefanie P, Avendaño-Herrera Ruben
Institut für Angewandte Mikrobiologie, Justus-Liebig-Universität Giessen, Giessen D-35392, Germany.
Laboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Viña del Mar, Chile.
Int J Syst Evol Microbiol. 2016 Nov;66(11):4671-4675. doi: 10.1099/ijsem.0.001408. Epub 2016 Aug 8.
One beige-pigmented, Gram-staining-negative, rod-shaped bacterium, strain E3/2T, was isolated from a zebrafish, Daniorerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 97.7 % 16S rRNA gene sequence similarity to the species Pseudoduganella violaceinigra and between 97.4 to 97.0 % to some species of the genera Duganella and Massilia, including Duganella radicis, Duganella phyllosphaerae, Massilia dura, Massilia lutea, Duganella sacchari, Duganella zoogloeoides, Massiliaalbidiflava and Massilia umbonata. Sequence similarities to all other species were below 97 %. The main cellular fatty acids of the strain were summed feature 3 fatty acids (C16 : 1ω7c/iso-C15 : 0 2-OH), C10 : 0 3-OH, C16 : 0 and C12 : 0. The polyamine pattern of strain E3/2T contained predominantly putrescine and 2-hydroxyputrescine. The major quinone was ubiquinone Q-8. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Based on phylogenetic, chemotaxonomic, genomic and phenotypic analyses we propose a novel species of the genus Pseudoduganella named Pseudoduganella danionis sp. nov., with strain E3/2T (=LMG 29678T=CCM 8698T) as the type strain.
从斑马鱼(Danio rerio)中分离出一株米色色素沉着、革兰氏染色阴性的杆状细菌,菌株E3/2T。基于近乎全长的16S rRNA基因序列的系统发育分析表明,该分离株与紫黑假杜根菌(Pseudoduganella violaceinigra)的16S rRNA基因序列相似性为97.7%,与杜根菌属(Duganella)和马赛菌属(Massilia)的一些物种,包括根际杜根菌(Duganella radicis)、叶球杜根菌(Duganella phyllosphaerae)、坚硬马赛菌(Massilia dura)、淡黄马赛菌(Massilia lutea)、甘蔗杜根菌(Duganella sacchari)、菌胶团杜根菌(Duganella zoogloeoides)、白色马赛菌(Massilia albidiflava)和瘤突马赛菌(Massilia umbonata)的相似性在97.4%至97.0%之间。与所有其他物种的序列相似性均低于97%。该菌株的主要细胞脂肪酸为总和特征3脂肪酸(C16 : 1ω7c/异-C15 : 0 2-OH)、C10 : 0 3-OH、C16 : 0和C12 : 0。菌株E3/2T的多胺模式主要包含腐胺和2-羟基腐胺。主要醌为泛醌Q-8。主要极性脂为双磷脂酰甘油、磷脂酰甘油和磷脂酰乙醇胺。基于系统发育、化学分类、基因组和表型分析,我们提出了假杜根菌属(Pseudoduganella)的一个新物种,命名为斑马鱼假杜根菌(Pseudoduganella danionis sp. nov.),以菌株E3/2T(=LMG 29678T=CCM 8698T)作为模式菌株。