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转录组学和蛋白质组学研究探索绿豆同基因系中的抗象甲基因。

Transcriptomic and Proteomic Research To Explore Bruchid-Resistant Genes in Mungbean Isogenic Lines.

机构信息

Department of Horticulture and Landscape Architecture, National Taiwan University , Taipei 10617, Taiwan.

Institute of Plant and Microbial Biology, Academia Sinica , Taipei 11529, Taiwan.

出版信息

J Agric Food Chem. 2016 Aug 31;64(34):6648-58. doi: 10.1021/acs.jafc.6b03015. Epub 2016 Aug 17.

Abstract

Mungbean (Vigna radiata (L.) Wilczek) is an important rotation legume crop for human nutrition in Asia. Bruchids (Callosobruchus spp.) currently cause heavy damage as pests of grain legumes during storage. We used omics-related technologies to study the mechanisms of bruchid resistance in seeds of the nearly isogenic lines VC1973A (bruchid-susceptible) and VC6089A (bruchid-resistant). A total of 399 differentially expressed genes (DEGs) were identified between the two lines by transcriptome sequencing. Among these DEGs, 251 exhibited high expression levels and 148 expressed low expression levels in seeds of VC6089A. Forty-five differential proteins (DPs) were identified by isobaric tags for relative and absolute quantification (iTRAQ); 21 DPs had higher abundances in VC6089A, and 24 DPs had higher abundances in VC1973A. According to transcriptome and proteome data, only three DEGs/DPs, including resistant-specific protein (g39185), gag/pol polyprotein (g34458), and aspartic proteinase (g5551), were identified and located on chromosomes 5, 1, and 7, respectively. Both g39185 and g34458 genes encode a protein containing a BURP domain. In previous research on bruchid molecular markers, the g39185 gene located close to the molecular markers of major bruchid-resistant locus may be a bruchid-resistant gene.

摘要

绿豆(Vigna radiata (L.) Wilczek)是亚洲人类营养中重要的轮作豆类作物。在储存过程中,斑蝥(Callosobruchus spp.)目前是豆类作物的主要害虫,造成严重损害。我们使用与组学相关的技术研究了近等基因系 VC1973A(易受斑蝥侵害)和 VC6089A(抗斑蝥)种子中抗斑蝥的机制。通过转录组测序,在这两个系之间共鉴定出 399 个差异表达基因(DEGs)。在 VC6089A 种子中,这些 DEGs 中有 251 个表达水平较高,148 个表达水平较低。通过等重同位素标记相对和绝对定量(iTRAQ)鉴定出 45 个差异蛋白(DP);在 VC6089A 中,21 个 DP 丰度较高,在 VC1973A 中,24 个 DP 丰度较高。根据转录组和蛋白质组数据,只有三个 DEG/DP,包括抗性特异性蛋白(g39185)、gag/pol 多蛋白(g34458)和天冬氨酸蛋白酶(g5551),被鉴定出来并分别位于第 5、1 和 7 号染色体上。g39185 和 g34458 基因均编码含有 BURP 结构域的蛋白质。在以前关于斑蝥分子标记的研究中,位于主要抗斑蝥抗性基因座附近的 g39185 基因可能是一个抗斑蝥基因。

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